Files in quevedor2/WadingPool
A toolkit for shallow/low-pass whole genome sequencing analysis
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.txt
NAMESPACE
R/aggregateAndFilter.R
R/calcExpectedHets.R
R/checks.R
R/dataProcessing.R
R/genSnpZygosity.R
R/getSampleSimilarity.R
R/hmm.R
R/hmm_viz.R
R/performance.R
R/saturationCurve.R
R/utils.R
README.md
build/wp_build.R
data-raw/DATASET.R
inst/bin/categorizeAD.sh
inst/bin/categorizeAD_GATK.sh
inst/bin/getLinesFromFile.pl
inst/external_tools/runGATKCollectAllelicCount.sh
inst/external_tools/runMutect_sample.sh
inst/main/genotypeId.R
inst/main/main.R
inst/main/simulations.R
inst/main/wp_identity.R
inst/main/wp_zygosity.R
inst/setup/setup_dbSNP.R
inst/setup/setup_dbSNP.sh
man/aggregateAndFilter.Rd
man/allbyall.Rd
man/calcExpectedHets.Rd
man/combZygPos.Rd
man/fitHMM.Rd
man/genSnpZygosity.Rd
man/getExpectedN.Rd
man/getSampleSimilarity.Rd
man/metrics.Rd
man/parseOutput.Rd
man/parseSeg.Rd
man/plotCnZyg.Rd
man/plotHMM.Rd
man/plotSampleSimilarity.Rd
man/sanitizeData.Rd
man/saturationCurve.Rd
man/simulate.Rd
man/toBed.Rd
vignettes/.gitignore
vignettes/vignette.Rmd
