plotCnZyg: Cn-Zyg plotter

In quevedor2/WadingPool: A toolkit for shallow/low-pass whole genome sequencing analysis

Description

Plots the zygosity and cn state

Usage

plotCnZyg(cn, zyg, tiles, cncol = "copy.number", ...)

Arguments

cn	GRanges object with a discrete integer cncol column
zyg	GRanges object with a discrete 'state' column of c('LOH', 'H1', etc...)
tiles	Reference GRanges object from tileGenome()
cncol	character: copy number column for cn GRanges object
...	pass in for plot()

Value

data frame containing the segment-level CN and zygosity state

quevedor2/WadingPool documentation built on Dec. 22, 2021, 10:59 a.m.