createAnalysisDetails: Create detailed covariate settings

In quinterpriest/FeatureExtraction: Generating Features for a Cohort

Create detailed covariate settings

Description

Create detailed covariate settings

Usage

createAnalysisDetails(
  analysisId,
  sqlFileName,
  parameters,
  includedCovariateConceptIds = c(),
  addDescendantsToInclude = FALSE,
  excludedCovariateConceptIds = c(),
  addDescendantsToExclude = FALSE,
  includedCovariateIds = c()
)

Arguments

analysisId	An integer between 0 and 999 that uniquely identifies this analysis.
sqlFileName	The name of the parameterized SQL file embedded in the featureExtraction package.
parameters	The list of parameter values used to render the template SQL.
includedCovariateConceptIds	A list of concept IDs that should be used to construct covariates.
addDescendantsToInclude	Should descendant concept IDs be added to the list of concepts to include?
excludedCovariateConceptIds	A list of concept IDs that should NOT be used to construct covariates.
addDescendantsToExclude	Should descendant concept IDs be added to the list of concepts to exclude?
includedCovariateIds	A list of covariate IDs that should be restricted to.

Details

creates an object specifying in detail how covariates should be contructed from data in the CDM model. Warning: this function is for advanced users only.

Value

An object of type analysisDetail, to be used in createDetailedCovariateSettings or createDetailedTemporalCovariateSettings.

Examples

analysisDetails <- createAnalysisDetails(analysisId = 1,
                                         sqlFileName = "DemographicsGender.sql",
                                         parameters = list(analysisId = 1,
                                                           analysisName = "Gender",
                                                           domainId = "Demographics"),
                                         includedCovariateConceptIds = c(),
                                         addDescendantsToInclude = FALSE,
                                         excludedCovariateConceptIds = c(),
                                         addDescendantsToExclude = FALSE,
                                         includedCovariateIds = c())

quinterpriest/FeatureExtraction documentation built on April 20, 2022, 12:49 a.m.