API for quinterpriest/PatientLevelPrediction
Developing patient level prediction using data in the OMOP Common Data Model
| Global functions | |
|---|---|
| AdaBoostClassifierInputs | Source code |
| DecisionTreeClassifierInputs | Source code |
| GaussianNBInputs | Source code |
| MLPClassifierInputs | Source code |
| MapIds | Source code |
| PatientLevelPrediction | Man page |
| RandomForestClassifierInputs | Source code |
| SVCInputs | Source code |
| accuracy | Man page Source code |
| addAttributes | Source code |
| addAttrition | Source code |
| addCalibrationSummary | Source code |
| addCohort | Source code |
| addCovariateSetting | Source code |
| addCovariateSummary | Source code |
| addDatabase | Source code |
| addDemographicSummary | Source code |
| addEvaluation | Source code |
| addEvaluationStatistics | Source code |
| addFESetting | Source code |
| addModel | Source code |
| addModelDesign | Source code |
| addModelSetting | Source code |
| addPlpDataSetting | Source code |
| addPopulationSetting | Source code |
| addPredictionDistribution | Source code |
| addResearcher | Source code |
| addResult | Source code |
| addSampleSetting | Source code |
| addSplitSettings | Source code |
| addStudiesModel | Source code |
| addStudy | Source code |
| addTar | Source code |
| addThresholdSummary | Source code |
| addTidySetting | Source code |
| aggregateCovariateSummaries | Source code |
| applyCrossValidationInR | Source code |
| applyFeatureengineering | Source code |
| applyTidyCovariateData | Source code |
| aucWithCi | Source code |
| aucWithoutCi | Source code |
| averagePrecision | Man page Source code |
| batchRestrict | Source code |
| brierScore | Man page Source code |
| calculatePrevs | Source code |
| calibrationInLarge | Source code |
| calibrationInLargeIntercept | Source code |
| calibrationLine | Man page Source code |
| calibrationWeak | Source code |
| checkBoolean | Source code |
| checkFileExists | Source code |
| checkHigher | Source code |
| checkHigherEqual | Source code |
| checkInStringVector | Source code |
| checkInputs | Source code |
| checkInputsSplit | Source code |
| checkIsClass | Source code |
| checkJson | Source code |
| checkLower | Source code |
| checkLowerEqual | Source code |
| checkNotNull | Source code |
| checkPySettings | Source code |
| checkRam | Source code |
| checkResultExists | Source code |
| checkTable | Source code |
| cleanNum | Source code |
| closeLog | Source code |
| computeAuc | Man page Source code |
| computeGridPerformance | Source code |
| configurePython | Man page Source code |
| covariateSummary | Man page Source code |
| covariateSummarySubset | Source code |
| createCohortCovariateSettings | Man page Source code |
| createCovariateSubsets | Source code |
| createCyclopsModel | Source code |
| createDatabaseDetails | Man page Source code |
| createDefaultExecuteSettings | Man page Source code |
| createDefaultSplitSetting | Man page Source code |
| createExecuteSettings | Man page Source code |
| createFeatureEngineeringSettings | Man page Source code |
| createLearningCurve | Man page Source code |
| createLog | Source code |
| createLogSettings | Man page Source code |
| createModelDesign | Man page Source code |
| createPlpResultTables | Man page Source code |
| createPreprocessSettings | Man page Source code |
| createRandomForestFeatureSelection | Man page Source code |
| createRestrictPlpDataSettings | Man page Source code |
| createSampleSettings | Man page Source code |
| createStudyPopulation | Man page Source code |
| createStudyPopulationSettings | Man page Source code |
| createTempModelLoc | Source code |
| createUnivariateFeatureSelection | Man page Source code |
| createValidationSettings | Man page Source code |
| dataSummary | Source code |
| diagnostic | Man page Source code |
| diagnosticOddsRatio | Man page Source code |
| enc | Source code |
| ensure_installed | Source code |
| evaluatePlp | Man page Source code |
| externalValidateDbPlp | Man page Source code |
| externalValidatePlp | Source code |
| extractAttributes | Source code |
| f1Score | Man page Source code |
| falseDiscoveryRate | Man page Source code |
| falseNegativeRate | Man page Source code |
| falseOmissionRate | Man page Source code |
| falsePositiveRate | Man page Source code |
| featureEngineer | Source code |
| filterCovariateIds | Source code |
| fitCyclopsModel | Source code |
| fitKNN | Source code |
| fitPlp | Man page Source code |
| fitPythonModel | Source code |
| fitRclassifier | Source code |
| fitSklearn | Source code |
| fitXgboost | Source code |
| getAnalysisId | Source code |
| getCV | Source code |
| getCalibrationSummary | Man page Source code |
| getCalibrationSummary_binary | Source code |
| getCalibrationSummary_survival | Source code |
| getCohortCovariateData | Man page Source code |
| getCohortFromList | Source code |
| getCohortFromPackage | Source code |
| getColumnNames | Source code |
| getCounts | Source code |
| getCounts2 | Source code |
| getCovariatesForGroup | Source code |
| getDataSettings | Source code |
| getDemographicSummary | Man page Source code |
| getDemographicSummary_binary | Source code |
| getDemographicSummary_survival | Source code |
| getDistribution | Source code |
| getEvaluationStatistics | Source code |
| getEvaluationStatistics_binary | Source code |
| getEvaluationStatistics_survival | Source code |
| getIdsForSetting | Source code |
| getNames | Source code |
| getOs | Source code |
| getPlpData | Man page Source code |
| getPredictionDistribution | Man page Source code |
| getPredictionDistribution_binary | Man page Source code |
| getPredictionDistribution_survival | Source code |
| getProportions | Source code |
| getQuantiles | Source code |
| getSettingFromId | Source code |
| getSettingValues | Source code |
| getSettingsTable | Source code |
| getSurvival | Source code |
| getThresholdSummary | Man page Source code |
| getThresholdSummary_binary | Man page Source code |
| getThresholdSummary_survival | Source code |
| getTrainFractions | Source code |
| getVariableImportance | Source code |
| getidList | Source code |
| gridCvPython | Source code |
| ici | Man page Source code |
| inverseLog | Source code |
| launchDiagnosticsExplorer | Man page Source code |
| lcWrapper | Source code |
| learningCurveHelper | Source code |
| limitCovariatesToPopulation | Source code |
| listAppend | Man page Source code |
| listCartesian | Source code |
| loadJsonFile | Source code |
| loadPlpAnalysesJson | Man page Source code |
| loadPlpData | Man page Source code |
| loadPlpModel | Man page Source code |
| loadPlpResult | Man page Source code |
| loadPlpShareable | Man page Source code |
| loadPrediction | Man page Source code |
| logFunct | Source code |
| modelBasedConcordance | Man page Source code |
| modelTypeToCyclopsModelType | Source code |
| negativeLikelihoodRatio | Man page Source code |
| negativePredictiveValue | Man page Source code |
| nrow | Source code |
| nrow.tbl | Source code |
| outcomeSurvivalPlot | Man page Source code |
| overSampleData | Source code |
| permute | Source code |
| permutePerf | Source code |
| pfi | Man page Source code |
| plotDemographicSummary | Man page Source code |
| plotF1Measure | Man page Source code |
| plotGeneralizability | Man page Source code |
| plotLearningCurve | Man page Source code |
| plotPlp | Man page Source code |
| plotPrecisionRecall | Man page Source code |
| plotPredictedPDF | Man page Source code |
| plotPredictionDistribution | Man page Source code |
| plotPreferencePDF | Man page Source code |
| plotSmoothCalibration | Man page Source code |
| plotSmoothCalibrationLoess | Source code |
| plotSmoothCalibrationRcs | Source code |
| plotSparseCalibration | Man page Source code |
| plotSparseCalibration2 | Man page Source code |
| plotSparseRoc | Man page Source code |
| plotVariableScatterplot | Man page Source code |
| plpDataSimulationProfile | Man page |
| populatePlpResultTables | Man page Source code |
| positiveLikelihoodRatio | Man page Source code |
| positivePredictiveValue | Man page Source code |
| predictCyclops | Man page Source code |
| predictCyclopsType | Source code |
| predictKnn | Source code |
| predictPlp | Man page Source code |
| predictPythonSklearn | Source code |
| predictValues | Source code |
| predictXgboost | Source code |
| prepareToJson | Source code |
| prepareToRlist | Source code |
| preprocessData | Man page |
| print.plpData | Source code |
| print.summary.plpData | Source code |
| printHeader | Source code |
| processDistribution | Source code |
| randomForestFeatureSelection | Source code |
| randomSplitter | Source code |
| recalibratePlp | Man page Source code |
| recalibratePlpRefit | Man page Source code |
| recalibrationInTheLarge | Source code |
| removeCellCount | Source code |
| removeList | Source code |
| runMultiplePlp | Man page Source code |
| runPlp | Man page Source code |
| sameData | Source code |
| sampleData | Source code |
| saveJsonFile | Source code |
| savePlpAnalysesJson | Man page Source code |
| savePlpData | Man page Source code |
| savePlpModel | Man page Source code |
| savePlpResult | Man page Source code |
| savePlpShareable | Man page Source code |
| savePrediction | Man page Source code |
| sensitivity | Man page Source code |
| setAdaBoost | Man page Source code |
| setCoxModel | Man page Source code |
| setDecisionTree | Man page Source code |
| setGradientBoostingMachine | Man page Source code |
| setIterativeHardThresholding | Man page Source code |
| setKNN | Man page Source code |
| setLassoLogisticRegression | Man page Source code |
| setMLP | Man page Source code |
| setNaiveBayes | Man page Source code |
| setPythonEnvironment | Man page Source code |
| setRandomForest | Man page Source code |
| setSVM | Man page Source code |
| simulatePlpData | Man page Source code |
| specificity | Man page Source code |
| splitData | Man page Source code |
| subjectSplitter | Source code |
| summary.plpData | Source code |
| timeSplitter | Source code |
| toSparseM | Man page Source code |
| underSampleData | Source code |
| univariateFeatureSelection | Source code |
| validateMultiplePlp | Man page Source code |
| varImpXgboost | Source code |
| viewDatabaseResultPlp | Man page Source code |
| viewMultiplePlp | Man page Source code |
| viewPlp | Man page Source code |
| viewPlps | Source code |
| weakRecalibration | Source code |
