In quinterpriest/PatientLevelPrediction: Developing patient level prediction using data in the OMOP Common Data Model

Best practice publications using the OHDSI PatientLevelPrediction framework

Topic	Research Summary	Link
Problem Specification	When is prediction suitable in observational data?	Guidelines needed
Data Creation	Comparison of cohort vs case-control design	Journal of Big Data
Data Creation	Addressing loss to follow-up (right censoring)	BMC medical informatics and decision makingk
Data Creation	Investigating how to address left censoring in features construction	BMC Medical Research Methodology
Data Creation	Impact of over/under-sampling	Study being developed
Data Creation	Impact of phenotypes	Study Done - Paper submitted
Model development	How much data do we need for prediction - Learning curves at scale	Preprint link
Model development	What impact does test/train/validation design have on model performance	BMJ Open
Model development	What is the impact of the classifier	JAMIA
Model development	Can we find hyper-parameter combinations per classifier that consistently lead to good performing models when using claims/EHR data?	Study needs to be done
Model development	Can we use ensembles to combine models developed using different databases to improve models transportability?	Paper under review at BMC
Evaluation	How should we present model performance? (e.g., new visualizations)	JAMIA Open
Evaluation	How to interpret external validation performance (can we figure out why the performance drops or stays consistent)?	Study needs to be done
Evaluation	Recalibration methods	Study needs to be done
Evaluation	Is there a way to automatically simplify models?	Study protocol under development

quinterpriest/PatientLevelPrediction documentation built on April 20, 2022, 12:50 a.m.