fast.mean.filter: A fast mean filter algorithm to smooth a matrix

Description Usage Arguments Value References

View source: R/fast.mean.filter.R

Description

A fast mean filter algorithm to smooth a matrix

Usage

1

Arguments

mat

the matrix to be smoothed.

h

window size used to calculate the mean for each cell.

Value

a smoothed matrix.

References

HiCRep: assessing the reproducibility of Hi-C data using a stratum-adjusted correlation coefficient. Tao Yang, Feipeng Zhang, Galip Gurkan Yardimci, Fan Song, Ross C Hardison, William Stafford Noble, Feng Yue, Qunhua Li. Genome Research 2017. doi: 10.1101/gr.220640.117


qunhualilab/hicrep documentation built on Feb. 27, 2020, 9:17 p.m.