fast.mean.filter: A fast mean filter algorithm to smooth a matrix
In qunhualilab/hicrep: Measuring the reproducibility of Hi-C data
Description
Usage
Arguments
Value
References
View source: R/fast.mean.filter.R
Description
A fast mean filter algorithm to smooth a matrix
Usage
1
fast.mean.filter(mat, h)
Arguments
mat
the matrix to be smoothed.
h
window size used to calculate the mean for each cell.
Value
a smoothed matrix.
References
HiCRep: assessing the reproducibility of Hi-C data using a
stratum-adjusted correlation coefficient. Tao Yang, Feipeng Zhang, Galip
Gurkan Yardimci, Fan Song, Ross C Hardison, William Stafford Noble,
Feng Yue, Qunhua Li. Genome Research 2017. doi: 10.1101/gr.220640.117
qunhualilab/hicrep documentation built on Feb. 27, 2020, 9:17 p.m.
R Package Documentation
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Description Usage Arguments Value References
View source: R/fast.mean.filter.R
Description
A fast mean filter algorithm to smooth a matrix
Usage
1 | fast.mean.filter(mat, h)
|
Arguments
mat |
the matrix to be smoothed. |
h |
window size used to calculate the mean for each cell. |
Value
a smoothed matrix.
References
HiCRep: assessing the reproducibility of Hi-C data using a stratum-adjusted correlation coefficient. Tao Yang, Feipeng Zhang, Galip Gurkan Yardimci, Fan Song, Ross C Hardison, William Stafford Noble, Feng Yue, Qunhua Li. Genome Research 2017. doi: 10.1101/gr.220640.117
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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