as.SingleCellExperimentList: Converts a list of Seurat objects into a list of Single Cell...
In quon-titative-biology/scAlign: An alignment and integration method for single cell genomics
Description
Usage
Arguments
Value
Author(s)
References
See Also
Examples
View source: R/scAlignSeuratWrapper.R
Description
Converts a list of Seurat objects into a list of Single Cell Experiment objects
Extends the native Seurat function "as.SingleCellExperiment" by adding the capability to pass lists of Seurat objects
Usage
1
as.SingleCellExperimentList(seurat.obj, genes.use = NULL)
Arguments
seurat.obj
List of Seurat objects to be converted to Single Cell Experiment objects.
genes.use
A character vector of gene names which exhibit variable expression across all datasets
Value
A correctly initialized SingleCellExperiment object
Author(s)
Tyler Brassel, Nelson Johansen, Gerald Quon
References
Johansen, N., Quon, G. scAlign: a tool for alignment, integration, and rare cell identification from scRNA-seq data.
Genome Biol 20, 166 (2019) doi: https://doi.org/10.1186/s13059-019-1766-4
See Also
<https://github.com/quon-titative-biology/scAlign>
Examples
1
sce.objects = as.SingleCellExperimentList(seurat.obj)
quon-titative-biology/scAlign documentation built on Nov. 17, 2021, 9:57 a.m.
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Description Usage Arguments Value Author(s) References See Also Examples
View source: R/scAlignSeuratWrapper.R
Description
Converts a list of Seurat objects into a list of Single Cell Experiment objects Extends the native Seurat function "as.SingleCellExperiment" by adding the capability to pass lists of Seurat objects
Usage
1 | as.SingleCellExperimentList(seurat.obj, genes.use = NULL)
|
Arguments
seurat.obj |
List of Seurat objects to be converted to Single Cell Experiment objects. |
genes.use |
A character vector of gene names which exhibit variable expression across all datasets |
Value
A correctly initialized SingleCellExperiment object
Author(s)
Tyler Brassel, Nelson Johansen, Gerald Quon
References
Johansen, N., Quon, G. scAlign: a tool for alignment, integration, and rare cell identification from scRNA-seq data. Genome Biol 20, 166 (2019) doi: https://doi.org/10.1186/s13059-019-1766-4
See Also
<https://github.com/quon-titative-biology/scAlign>
Examples
1 | sce.objects = as.SingleCellExperimentList(seurat.obj)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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