CjsTransientModel: Cormack-Jolly-Seber with transience model class

In r-glennie/openpopscr: Open Population Spatial Capture-Recapture

Description

Cormack-Jolly-Seber with transience model: fits model, formats inference, and simulates from fitted model. This model inherits all the functions of the CjsModel class. Functions that are different or additional are documented here.

• form: a named list of formulae for each parameter (~1 for constant)

• scr_data: a ScrData object

• start: a named list of starting values

• num_cores (optional, default = 1): number of processors cores to use in parallelised code

• print: (defualt TRUE) if TRUE then useful output is printed

Methods include:

• calc_initial_distribution(): computes initial distribution over life states (unborn, alive, dead)

• calc_llk(): compute log-likelihood at current parameter values

• simulate(): simulate ScrData object from fitted model

Usage

CjsTransientModel

Format

An object of class R6ClassGenerator of length 24.

r-glennie/openpopscr documentation built on Oct. 9, 2021, 9:01 p.m.