Files in r-glennie/openpopscr
Open Population Spatial Capture-Recapture
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/RcppExports.R
R/autoini.R
R/cjs_model.R
R/cjs_trans_model.R
R/compute_px.R
R/data.R
R/detect_fn.R
R/js_model.R
R/js_trans_model.R
R/logLik.R
R/mlogit.R
R/pplink.R
R/scr_data.R
R/scr_model.R
R/scr_trans_model.R
R/simulate.R
R/splines.R
R/state_model.R
R/strata_model.R
R/summary.R
README.md
data/cjsmodel_example.RData
data/jsmodel_example.RData
data/scrmodel_example.RData
data/stoat.RData
data/stoatcapt.txt
data/stoattrap.txt
data/stratamodel_example.RData
inst/CITATION
inst/case_studies/README.md
inst/case_studies/stoat.R
inst/devel/README.md
inst/devel/simulateOpenmix.R
inst/devel/simulateSCR.R
inst/devel/simulateSCR_noneuc.R
inst/devel/simulateSCRcovs.R
inst/devel/simulateSCRmix.R
inst/examples/01_scr_basic.R
inst/examples/02_scr_covs.R
inst/examples/03_scr_density.R
inst/examples/04_scr_move.R
inst/examples/05_cjs_basic.R
inst/examples/06_cjs_robust.R
inst/examples/07_cjs_move.R
inst/examples/08_js_basic.R
inst/examples/09_js_density.R
inst/examples/10_js_robust.R
inst/examples/11_js_move.R
inst/examples/12_strata.R
inst/examples/13_scr_mixture.R
inst/examples/14_scr_transitions.R
inst/examples/15_scr_partialmixture.R
inst/examples/16_scr_sex_and_individual_mixture.R
inst/examples/17_scr_noneuc.R
inst/examples/README.md
inst/simulations/01_scr_basic.R
inst/simulations/02_scr_covs.R
inst/simulations/03_scr_density.R
inst/simulations/04_scr_move.R
inst/simulations/05_cjs_basic.R
inst/simulations/06_cjs_robust.R
inst/simulations/07_cjs_move.R
inst/simulations/08_js_basic.R
inst/simulations/09_js_density.R
inst/simulations/10_js_robust.R
inst/simulations/11_js_move.R
inst/simulations/12_scr_mixture.R
man/C_calc_D.Rd
man/C_calc_llk.Rd
man/C_calc_move_llk.Rd
man/C_calc_move_pdet.Rd
man/C_calc_pdet.Rd
man/C_calc_pr_capture.Rd
man/CjsModel.Rd
man/CjsTransientModel.Rd
man/JsModel.Rd
man/JsTransientModel.Rd
man/ScrData.Rd
man/ScrModel.Rd
man/ScrTransientModel.Rd
man/StrataModel.Rd
man/cjsmodel_example.Rd
man/get_start_values.Rd
man/logLik.CjsModel.Rd
man/logLik.CjsTransientModel.Rd
man/logLik.JsModel.Rd
man/logLik.JsTransientModel.Rd
man/logLik.ScrModel.Rd
man/logLik.ScrTransientModel.Rd
man/logLik.StrataModel.Rd
man/scrmodel_example.Rd
man/simulate_cjs_openscr.Rd
man/simulate_js_openscr.Rd
man/simulate_scr.Rd
man/stoat.Rd
man/stratamodel_example.Rd
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/calc_D.cpp
src/calc_llk.cpp
src/calc_move_llk.cpp
src/calc_pr_capture.cpp
src/forward_declare.h
src/forwback.cpp
src/forwback_move.cpp
src/init.c
tests/testthat.R
tests/testthat/test-cjsmodel.R
tests/testthat/test-cjstransientmodel.R
tests/testthat/test-jsmodel.R
tests/testthat/test-jstransientmodel.R
tests/testthat/test-scrdata.R
tests/testthat/test-scrmodel.R
tests/testthat/test-scrtransientmodel.R
vignettes/CjsModel.Rmd
vignettes/Introduction.Rmd
vignettes/JsModel.Rmd
vignettes/ScrData.Rmd
vignettes/ScrModel.Rmd
vignettes/Strata.Rmd
vignettes/refs.bib
