inst/examples/README.md

In r-glennie/openpopscr: Open Population Spatial Capture-Recapture

EXAMPLE CODE

Basics

1. scr_basic.R: basic SCR model

2. scr_covs.R: SCR model with covariates on detection

3. scr_density.R: SCR model with a density surface

4. scr_move.R: SCR with transience

CJS

1. cjs_basic.R: basic CJS model

2. cjs_robust.R: CJS with robust design

3. cjs_move.R: CJS with transience

JS

1. js_basic.R: basic JS model

2. js_density.R: JS with density surface

3. js_robust.R: JS with robust design

4. js_move.R: JS with transience

STRATA

1. strata.R: stratified analysis

STATES

1. scr_mixture: mixture models with SCR

2. scr_transitions: mixture models where individuals can switch states

3. scr_partialmixture: mixture model where some states are observed

4. scr_sex_and_individual_mixture: mixture model where sex is partially observed and there is individual heterogenity within sex

r-glennie/openpopscr documentation built on Oct. 9, 2021, 9:01 p.m.