tests/testthat/_snaps/scan-deps.md
In r-lib/depends: Package Dependency Resolution and Downloads
scan_deps errors
Code
scan_deps(1:10)
Condition
Error:
! `path` must be a character vector without `NA`, but it is an integer vector
Code
scan_deps(root = mtcars)
Condition
Error:
! `root` must be a string (character scalar), but it is a data frame.
Code
scan_deps(root = "sdfssdfsdf")
Condition
Error:
! Project root 'sdfssdfsdf' does not exist.
Code
scan_deps("sdfssdfsdf")
Condition
Error:
! Path does not exist: 'sdfssdfsdf'.
Code
scan_deps(c("sdfssdfsdf-1", "sdfssdfsdf-2"))
Condition
Error:
! Paths do not exist: 'sdfssdfsdf-1' and 'sdfssdfsdf-2'.
Code
scan_deps("foo", "bar")
Condition
Error:
! 'foo' is outside of project root 'bar'.
Code
scan_deps(c("foo", "foobar"), "bar")
Condition
Error:
! 'foo' and 'foobar' are outside of project root 'bar'.
get_deps_cache_path
Code
writeLines(get_deps_cache_path())
Output
<tempdir>/<tempfile>/R/pkgcache/deps/2
Code
writeLines(get_deps_cache_path("badcafe"))
Output
<tempdir>/<tempfile>/R/pkgcache/deps/2/ba/badcafe
clear_deps_cache
Code
dir(tmp, recursive = TRUE)
Output
[1] "R/pkgcache/deps/2/ba/badcafe"
Code
dir(tmp, recursive = TRUE)
Output
character(0)
re_r_dep
Code
re_r_dep()
Output
[1] "library|require|loadNamespace|::|setClass|setGeneric|pkg_attach|p_load|module|import|box::|tar_option_set|glue|ggsave|set_engine|opts_chunk|geom_hex|JunitReporter|geom_hex|JunitReporter"
scan_deps_df
Code
scan_deps_df()
Output
# A data frame: 0 x 9
# i 9 variables: path <chr>, ref <chr>, package <chr>, version <chr>,
# type <chr>, code <chr>, start_row <int>, start_column <int>,
# start_byte <int>
scan_path_deps_do
Code
scan_path_deps_do(readLines(rfile), basename(rfile))
Output
# A data frame: 3 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 code.R CD CD * prod CD::pkg 4 1 26
2 code.R AB AB * prod library(~ 1 1 1
3 code.R BC BC * prod require(~ 2 1 13
Code
scan_path_deps_do(readLines(nsfile), basename(nsfile))
Output
# A data frame: 2 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 NAMESPACE stats stats * prod stats 1 1 1
2 NAMESPACE utils utils * prod utils 1 1 1
Code
scan_path_deps_do("code", "foo.unknown")
Condition
Error:
! Cannot parse .unknown file for dependencies, internal error
scan_path_deps_do_r
Code
scan_path_deps_do_r(readLines(rfile), rfile)
Output
# A data frame: 3 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 fixtures/scan/project-1/R/code.R CD CD * prod CD::pkg 4 1 26
2 fixtures/scan/project-1/R/code.R AB AB * prod library(AB) 1 1 1
3 fixtures/scan/project-1/R/code.R BC BC * prod require(BC) 2 1 13
scan_path_deps_do_fn_hits
Code
scan_path_deps_do_r(readLines(rfile), rfile)
Output
# A data frame: 2 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 fixtures/scan/methods.R methods methods * prod "setClass(\"track\", slots = c(x=\"numeric\", y=\"numeric\"))" 2 10 43
2 fixtures/scan/methods.R methods methods * prod "setGeneric(\"plot\")" 6 1 171
scan_path_deps_do_jr_hits
Code
scan_path_deps_do_r(readLines(rfile), rfile)
Output
# A data frame: 6 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 fixtures/scan/junit.R testthat testthat * prod testthat::JunitReporter 1 8 8
2 fixtures/scan/junit.R testthat testthat * prod library(testthat) 3 1 39
3 fixtures/scan/junit.R xml2 xml2 * prod testthat::JunitReporter$new() 1 8 8
4 fixtures/scan/junit.R xml2 xml2 * prod JunitReporter$new() 5 9 66
5 fixtures/scan/junit.R xml2 xml2 * prod JunitReporter 1 18 18
6 fixtures/scan/junit.R xml2 xml2 * prod JunitReporter 5 9 66
scan_pat_deps_do_ragg_hits
Code
scan_path_deps_do_rmd(readLines(rfile), rfile)
Output
# A data frame: 4 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 fixtures/scan/knitr.Rmd knitr knitr * prod "knitr::opts_chunk" 3 1 9
2 fixtures/scan/knitr.Rmd knitr knitr * prod "knitr::opts_chunk" 7 1 61
3 fixtures/scan/knitr.Rmd ragg ragg * prod "knitr::opts_chunk$set(dev = \"ragg_png\")" 3 1 9
4 fixtures/scan/knitr.Rmd rmarkdown rmarkdown * prod "r" 2 5 6
Code
scan_path_deps_do_rmd(readLines(rfile), rfile)
Output
# A data frame: 2 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 fixtures/scan/noragg.Rmd knitr knitr * prod knitr::opts_chunk 2 1 8
2 fixtures/scan/noragg.Rmd rmarkdown rmarkdown * prod r 1 5 5
safe_parse_pkg_from_call
Code
safe_parse_pkg_from_call(NA_character_, "library", "library(qwe)")
Output
[1] "qwe"
parse_pkg_from_call
Code
parse_pkg_from_call(NA_character_, "library", "library(qwe)")
Output
[1] "qwe"
Code
parse_pkg_from_call("base", "loadNamespace", "loadNamespace('q1')")
Output
[1] "q1"
Code
parse_pkg_from_call("base", "requireNamespace", "requireNamespace('q1')")
Output
[1] "q1"
Code
parse_pkg_from_call(NA_character_, "pkg_attach", "pkg_attach('foobar')")
Output
[1] "foobar"
Code
parse_pkg_from_call(NA_character_, "pkg_attach2", "pkg_attach2('foobar')")
Output
[1] "foobar"
Code
parse_pkg_from_call("pacman", "p_load", "p_load('p1')")
Output
[1] "p1"
Code
parse_pkg_from_call(NA_character_, "import", "import(x1)")
Output
[1] "x1"
Code
parse_pkg_from_call(NA_character_, "module", "module({import('x2')})")
Output
[1] "x2"
Code
parse_pkg_from_call("import", "from", "import::from(dplyr)")
Output
[1] "dplyr"
Code
parse_pkg_from_call("import", "into",
"import::into('operators', .from = 'dplyr')")
Output
[1] "dplyr"
Code
parse_pkg_from_call("import", "here", "import::here('dplyr')")
Output
[1] "dplyr"
Code
parse_pkg_from_call("box", "use", "box::use(dplyr[filter, select])")
Output
[1] "dplyr"
Code
parse_pkg_from_call("targets", "tar_option_set",
"tar_option_set(packages = c('p1', 'p2'))")
Output
[1] "p1" "p2"
Code
parse_pkg_from_call("glue", "glue", "glue::glue('blah {library(x5)} blah')")
Output
[1] "x5"
Code
parse_pkg_from_call(NA_character_, "ggsave", "ggsave(filename = 'foo.svg')")
Output
[1] "svglite"
Code
parse_pkg_from_call(NA_character_, "set_engine", "set_engine(engine = 'spark')")
Output
[1] "sparklyr"
Code
parse_pkg_from_call("R6", "R6Class",
"R6::R6Class('foobar', inherit = JunitReporter)")
Output
[1] "xml2"
Code
parse_pkg_from_call("testthat", "test_dir",
"testthat::test_dir(reporter = 'junit')")
Output
[1] "xml2"
parse_pkg_from_call_library
Code
ppcl("library", "library(qqq)")
Output
[1] "qqq"
Code
ppcl("library", "library('qqq')")
Output
[1] "qqq"
Code
ppcl("library", "library(qqq)", ns = "base")
Output
[1] "qqq"
Code
ppcl("require", "require(qqq)")
Output
[1] "qqq"
Code
ppcl("require", "require('qqq')")
Output
[1] "qqq"
Code
ppcl("require", "require('qqq')", ns = "base")
Output
[1] "qqq"
dependencies_eval
Code
dependencies_eval(quote({
1:10
c(10:1)[1:3]
}))
Output
[1] 10 9 8
scan_path_deps_do_rmd
Code
scan_path_deps_do_rmd(readLines(path), "chunk-errors.Rmd")
Output
# A data frame: 2 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 chunk-errors.Rmd dplyr dplyr * prod library(dplyr) 8 1 115
2 chunk-errors.Rmd rmarkdown rmarkdown * prod r 7 5 112
scan_path_deps_do_rmd #2
Code
scan_path_deps_do_rmd(readLines(path), "inline-chunks.Rmd")
Output
# A data frame: 3 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 inline-chunks.Rmd inline inline * prod inline::chunks 4 49 68
2 inline-chunks.Rmd multiple multiple * prod multiple::calls 4 92 111
3 inline-chunks.Rmd separate separate * prod separate::chunks 6 12 160
scan_path_deps_do_rmd #3
Code
scan_path_deps_do_rmd(readLines(path), "nothing.Rmd")
Output
# A data frame: 1 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 nothing.Rmd rmarkdown rmarkdown * prod r 7 5 90
scan_path_deps_do_header_hits
Code
scan_path_deps_do_rmd(readLines(path), basename(path))
Output
# A data frame: 2 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 header.Rmd p1 p1 * prod p1::fun 4 14 32
2 header.Rmd p2 p2 * prod library(p2) 7 14 81
scan_path_deps_do_header_shiny_hits
Code
scan_path_deps_do_rmd(readLines(path), basename(path))
Output
# A data frame: 4 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 header-shiny.Rmd shiny shiny * prod "shiny" 4 11 26
2 header-shiny.Rmd shiny shiny * prod "'shiny'" 5 9 40
3 header-shiny.Rmd shiny shiny * prod "\"shiny\"" 6 11 58
4 header-shiny.Rmd shiny shiny * prod "|\n shiny" 7 9 74
Code
scan_path_deps_do_rmd(readLines(path), basename(path))
Output
# A data frame: 4 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 header-shiny2.Rmd shiny shiny * prod "shiny" 5 9 32
2 header-shiny2.Rmd shiny shiny * prod "'shiny'" 7 9 56
3 header-shiny2.Rmd shiny shiny * prod "\"shiny\"" 9 11 82
4 header-shiny2.Rmd shiny shiny * prod ">\n shiny" 11 9 106
scan_path_deps_do_header_bslib_hits
Code
scan_path_deps_do_rmd(readLines(path), basename(path))
Output
# A data frame: 1 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 header-bslib.Rmd bslib bslib * prod "output:\n html_document:\n toc: true\n theme: some theme" 4 1 16
scan_path_deps_do_dsc
Code
print(scan_path_deps_do_dsc(readLines(path), basename(path)), n = Inf)
Output
# A data frame: 42 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 DESCRIPTION callr callr >=3.3.1 prod callr 1 1 1
2 DESCRIPTION r-lib/cli cli >=3.6.0 prod r-lib/cli 1 1 1
3 DESCRIPTION curl curl * prod curl 1 1 1
4 DESCRIPTION desc desc >=1.4.3 prod desc 1 1 1
5 DESCRIPTION filelock filelock >=1.0.2 prod filelock 1 1 1
6 DESCRIPTION jsonlite jsonlite * prod jsonlite 1 1 1
7 DESCRIPTION lpSolve lpSolve * prod lpSolve 1 1 1
8 DESCRIPTION pkgbuild pkgbuild >=1.0.2 prod pkgbuild 1 1 1
9 DESCRIPTION pkgcache pkgcache >=2.2.0 prod pkgcache 1 1 1
10 DESCRIPTION processx processx >=3.4.2 prod processx 1 1 1
11 DESCRIPTION ps ps * prod ps 1 1 1
12 DESCRIPTION R6 R6 * prod R6 1 1 1
13 DESCRIPTION zip zip >=2.3.0 prod zip 1 1 1
14 DESCRIPTION asciicast asciicast >=2.2.0.9000 test asciicast 1 1 1
15 DESCRIPTION codetools codetools * test codetools 1 1 1
16 DESCRIPTION covr covr * test covr 1 1 1
17 DESCRIPTION debugme debugme * test debugme 1 1 1
18 DESCRIPTION fansi fansi * test fansi 1 1 1
19 DESCRIPTION fs fs * test fs 1 1 1
20 DESCRIPTION gh gh * test gh 1 1 1
21 DESCRIPTION gitcreds gitcreds * test gitcreds 1 1 1
22 DESCRIPTION glue glue * test glue 1 1 1
23 DESCRIPTION htmlwidgets htmlwidgets * test htmlwidgets 1 1 1
24 DESCRIPTION mockery mockery * test mockery 1 1 1
25 DESCRIPTION pak pak * test pak 1 1 1
26 DESCRIPTION pingr pingr >=2.0.0 test pingr 1 1 1
27 DESCRIPTION rmarkdown rmarkdown * test rmarkdown 1 1 1
28 DESCRIPTION rstudioapi rstudioapi * test rstudioapi 1 1 1
29 DESCRIPTION spelling spelling * test spelling 1 1 1
30 DESCRIPTION svglite svglite * test svglite 1 1 1
31 DESCRIPTION testthat testthat >=3.2.0 test testthat 1 1 1
32 DESCRIPTION tibble tibble * test tibble 1 1 1
33 DESCRIPTION webfakes webfakes >=1.1.5.9000 test webfakes 1 1 1
34 DESCRIPTION withr withr >=2.1.1 test withr 1 1 1
35 DESCRIPTION gh gh * dev gh 1 1 1
36 DESCRIPTION pkgsearch pkgsearch * dev pkgsearch 1 1 1
37 DESCRIPTION withr withr >=2.1.1 dev withr 1 1 1
38 DESCRIPTION r-lib/asciicast asciicast * test r-lib/asciicast 1 1 1
39 DESCRIPTION covr covr * test covr 1 1 1
40 DESCRIPTION r-lib/asciicast asciicast * dev r-lib/asciicast 1 1 1
41 DESCRIPTION pkgdown pkgdown >=2.0.2 dev pkgdown 1 1 1
42 DESCRIPTION tidyverse/tidytemplate tidytemplate * dev tidyverse/tidytemplate 1 1 1
scan_path_deps_do_namespace
Code
print(scan_path_deps_do_namespace(readBin(path, "raw", 10000), path), n = Inf)
Output
# A data frame: 2 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 fixtures/scan/NAMESPACE stats stats * prod stats 1 1 1
2 fixtures/scan/NAMESPACE utils utils * prod utils 1 1 1
scan_path_deps_do_{bookdown,pkgdown,quarto,renv_lock,rsconnect}
Code
scan_deps()[]
Output
# A data frame: 4 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 bookdown/_bookdown.yml bookdown bookdown * prod <NA> 1 1 1
2 _pkgdown.yml pkgdown pkgdown * prod <NA> 1 1 1
3 renv.lock renv renv * prod <NA> 1 1 1
4 rsconnect rsconnect rsconnect * prod <NA> 1 1 1
.Rproj file
Code
scan_deps(project, root = project)[]
Output
# A data frame: 2 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 pkgdepends.Rproj devtools devtools * prod PackageUseDevtools: Yes 1 1 1
2 pkgdepends.Rproj roxygen2 roxygen2 * prod PackageUseDevtools: Yes 1 1 1
scan_path_deps_do_rnw_ranges
Code
scan_path_deps_do_rnw_ranges(code)
Output
[[1]]
[1] 11 13
[[2]]
[1] 15 17
[[3]]
[1] 19 21
[[4]]
[1] 22 25
[[5]]
[1] 27 29
scan_path_deps_do_rnw_parse_chunk_header
Code
scan_path_deps_do_rnw_parse_chunk_header("")
Output
named list()
Code
scan_path_deps_do_rnw_parse_chunk_header("name")
Output
$label
[1] "name"
Code
scan_path_deps_do_rnw_parse_chunk_header(
"name, foo = 1, bar = TRUE, this = that")
Output
$label
[1] "name"
$foo
[1] 1
$bar
[1] TRUE
$this
that
.Rnw file
Code
scan_path_deps_do_rnw(readLines(path), basename(path))
Output
# A data frame: 3 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 test.Rnw cli cli * prod library(cli) 1 1 1
2 test.Rnw filelock filelock * prod filelock::lock 1 1 1
3 test.Rnw pak pak * prod library(pak) 2 1 43
Code
scan_path_deps_do(readLines(path), basename(path))
Output
# A data frame: 3 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 test.Rnw cli cli * prod library(cli) 1 1 1
2 test.Rnw filelock filelock * prod filelock::lock 1 1 1
3 test.Rnw pak pak * prod library(pak) 2 1 43
Ignored chunks in .Rnw file
Code
scan_path_deps_do(readBin(path, "raw", file.size(path)), basename(path))
Output
# A data frame: 6 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 ignore-test.Rnw good good * prod library(good) 1 1 1
2 ignore-test.Rnw butthisisgood butthisisgood * prod library(butthisisgood) 1 1 1
3 ignore-test.Rnw butthisisgood butthisisgood * prod library(butthisisgood) 1 1 1
4 ignore-test.Rnw good good * prod library(good) 1 1 1
5 ignore-test.Rnw good good * prod library(good) 1 1 1
6 ignore-test.Rnw good good * prod library(good) 1 1 1
IPython notebook
Code
scan_path_deps_do(readLines(path), basename(path))
Output
# A data frame: 4 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 notebook.ipynb IRkernel IRkernel * prod <NA> 1 1 1
2 notebook.ipynb MASS MASS * prod library(MASS) 1 1 1
3 notebook.ipynb stats stats * prod stats::setNames 1 1 1
4 notebook.ipynb cli cli * prod cli::cli_text 2 1 19
r-lib/depends documentation built on April 14, 2025, 1:59 a.m.
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scan_deps errors
Code
scan_deps(1:10)
Condition
Error:
! `path` must be a character vector without `NA`, but it is an integer vector
Code
scan_deps(root = mtcars)
Condition
Error:
! `root` must be a string (character scalar), but it is a data frame.
Code
scan_deps(root = "sdfssdfsdf")
Condition
Error:
! Project root 'sdfssdfsdf' does not exist.
Code
scan_deps("sdfssdfsdf")
Condition
Error:
! Path does not exist: 'sdfssdfsdf'.
Code
scan_deps(c("sdfssdfsdf-1", "sdfssdfsdf-2"))
Condition
Error:
! Paths do not exist: 'sdfssdfsdf-1' and 'sdfssdfsdf-2'.
Code
scan_deps("foo", "bar")
Condition
Error:
! 'foo' is outside of project root 'bar'.
Code
scan_deps(c("foo", "foobar"), "bar")
Condition
Error:
! 'foo' and 'foobar' are outside of project root 'bar'.
get_deps_cache_path
Code
writeLines(get_deps_cache_path())
Output
<tempdir>/<tempfile>/R/pkgcache/deps/2
Code
writeLines(get_deps_cache_path("badcafe"))
Output
<tempdir>/<tempfile>/R/pkgcache/deps/2/ba/badcafe
clear_deps_cache
Code
dir(tmp, recursive = TRUE)
Output
[1] "R/pkgcache/deps/2/ba/badcafe"
Code
dir(tmp, recursive = TRUE)
Output
character(0)
re_r_dep
Code
re_r_dep()
Output
[1] "library|require|loadNamespace|::|setClass|setGeneric|pkg_attach|p_load|module|import|box::|tar_option_set|glue|ggsave|set_engine|opts_chunk|geom_hex|JunitReporter|geom_hex|JunitReporter"
scan_deps_df
Code
scan_deps_df()
Output
# A data frame: 0 x 9
# i 9 variables: path <chr>, ref <chr>, package <chr>, version <chr>,
# type <chr>, code <chr>, start_row <int>, start_column <int>,
# start_byte <int>
scan_path_deps_do
Code
scan_path_deps_do(readLines(rfile), basename(rfile))
Output
# A data frame: 3 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 code.R CD CD * prod CD::pkg 4 1 26
2 code.R AB AB * prod library(~ 1 1 1
3 code.R BC BC * prod require(~ 2 1 13
Code
scan_path_deps_do(readLines(nsfile), basename(nsfile))
Output
# A data frame: 2 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 NAMESPACE stats stats * prod stats 1 1 1
2 NAMESPACE utils utils * prod utils 1 1 1
Code
scan_path_deps_do("code", "foo.unknown")
Condition
Error:
! Cannot parse .unknown file for dependencies, internal error
scan_path_deps_do_r
Code
scan_path_deps_do_r(readLines(rfile), rfile)
Output
# A data frame: 3 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 fixtures/scan/project-1/R/code.R CD CD * prod CD::pkg 4 1 26
2 fixtures/scan/project-1/R/code.R AB AB * prod library(AB) 1 1 1
3 fixtures/scan/project-1/R/code.R BC BC * prod require(BC) 2 1 13
scan_path_deps_do_fn_hits
Code
scan_path_deps_do_r(readLines(rfile), rfile)
Output
# A data frame: 2 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 fixtures/scan/methods.R methods methods * prod "setClass(\"track\", slots = c(x=\"numeric\", y=\"numeric\"))" 2 10 43
2 fixtures/scan/methods.R methods methods * prod "setGeneric(\"plot\")" 6 1 171
scan_path_deps_do_jr_hits
Code
scan_path_deps_do_r(readLines(rfile), rfile)
Output
# A data frame: 6 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 fixtures/scan/junit.R testthat testthat * prod testthat::JunitReporter 1 8 8
2 fixtures/scan/junit.R testthat testthat * prod library(testthat) 3 1 39
3 fixtures/scan/junit.R xml2 xml2 * prod testthat::JunitReporter$new() 1 8 8
4 fixtures/scan/junit.R xml2 xml2 * prod JunitReporter$new() 5 9 66
5 fixtures/scan/junit.R xml2 xml2 * prod JunitReporter 1 18 18
6 fixtures/scan/junit.R xml2 xml2 * prod JunitReporter 5 9 66
scan_pat_deps_do_ragg_hits
Code
scan_path_deps_do_rmd(readLines(rfile), rfile)
Output
# A data frame: 4 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 fixtures/scan/knitr.Rmd knitr knitr * prod "knitr::opts_chunk" 3 1 9
2 fixtures/scan/knitr.Rmd knitr knitr * prod "knitr::opts_chunk" 7 1 61
3 fixtures/scan/knitr.Rmd ragg ragg * prod "knitr::opts_chunk$set(dev = \"ragg_png\")" 3 1 9
4 fixtures/scan/knitr.Rmd rmarkdown rmarkdown * prod "r" 2 5 6
Code
scan_path_deps_do_rmd(readLines(rfile), rfile)
Output
# A data frame: 2 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 fixtures/scan/noragg.Rmd knitr knitr * prod knitr::opts_chunk 2 1 8
2 fixtures/scan/noragg.Rmd rmarkdown rmarkdown * prod r 1 5 5
safe_parse_pkg_from_call
Code
safe_parse_pkg_from_call(NA_character_, "library", "library(qwe)")
Output
[1] "qwe"
parse_pkg_from_call
Code
parse_pkg_from_call(NA_character_, "library", "library(qwe)")
Output
[1] "qwe"
Code
parse_pkg_from_call("base", "loadNamespace", "loadNamespace('q1')")
Output
[1] "q1"
Code
parse_pkg_from_call("base", "requireNamespace", "requireNamespace('q1')")
Output
[1] "q1"
Code
parse_pkg_from_call(NA_character_, "pkg_attach", "pkg_attach('foobar')")
Output
[1] "foobar"
Code
parse_pkg_from_call(NA_character_, "pkg_attach2", "pkg_attach2('foobar')")
Output
[1] "foobar"
Code
parse_pkg_from_call("pacman", "p_load", "p_load('p1')")
Output
[1] "p1"
Code
parse_pkg_from_call(NA_character_, "import", "import(x1)")
Output
[1] "x1"
Code
parse_pkg_from_call(NA_character_, "module", "module({import('x2')})")
Output
[1] "x2"
Code
parse_pkg_from_call("import", "from", "import::from(dplyr)")
Output
[1] "dplyr"
Code
parse_pkg_from_call("import", "into",
"import::into('operators', .from = 'dplyr')")
Output
[1] "dplyr"
Code
parse_pkg_from_call("import", "here", "import::here('dplyr')")
Output
[1] "dplyr"
Code
parse_pkg_from_call("box", "use", "box::use(dplyr[filter, select])")
Output
[1] "dplyr"
Code
parse_pkg_from_call("targets", "tar_option_set",
"tar_option_set(packages = c('p1', 'p2'))")
Output
[1] "p1" "p2"
Code
parse_pkg_from_call("glue", "glue", "glue::glue('blah {library(x5)} blah')")
Output
[1] "x5"
Code
parse_pkg_from_call(NA_character_, "ggsave", "ggsave(filename = 'foo.svg')")
Output
[1] "svglite"
Code
parse_pkg_from_call(NA_character_, "set_engine", "set_engine(engine = 'spark')")
Output
[1] "sparklyr"
Code
parse_pkg_from_call("R6", "R6Class",
"R6::R6Class('foobar', inherit = JunitReporter)")
Output
[1] "xml2"
Code
parse_pkg_from_call("testthat", "test_dir",
"testthat::test_dir(reporter = 'junit')")
Output
[1] "xml2"
parse_pkg_from_call_library
Code
ppcl("library", "library(qqq)")
Output
[1] "qqq"
Code
ppcl("library", "library('qqq')")
Output
[1] "qqq"
Code
ppcl("library", "library(qqq)", ns = "base")
Output
[1] "qqq"
Code
ppcl("require", "require(qqq)")
Output
[1] "qqq"
Code
ppcl("require", "require('qqq')")
Output
[1] "qqq"
Code
ppcl("require", "require('qqq')", ns = "base")
Output
[1] "qqq"
dependencies_eval
Code
dependencies_eval(quote({
1:10
c(10:1)[1:3]
}))
Output
[1] 10 9 8
scan_path_deps_do_rmd
Code
scan_path_deps_do_rmd(readLines(path), "chunk-errors.Rmd")
Output
# A data frame: 2 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 chunk-errors.Rmd dplyr dplyr * prod library(dplyr) 8 1 115
2 chunk-errors.Rmd rmarkdown rmarkdown * prod r 7 5 112
scan_path_deps_do_rmd #2
Code
scan_path_deps_do_rmd(readLines(path), "inline-chunks.Rmd")
Output
# A data frame: 3 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 inline-chunks.Rmd inline inline * prod inline::chunks 4 49 68
2 inline-chunks.Rmd multiple multiple * prod multiple::calls 4 92 111
3 inline-chunks.Rmd separate separate * prod separate::chunks 6 12 160
scan_path_deps_do_rmd #3
Code
scan_path_deps_do_rmd(readLines(path), "nothing.Rmd")
Output
# A data frame: 1 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 nothing.Rmd rmarkdown rmarkdown * prod r 7 5 90
scan_path_deps_do_header_hits
Code
scan_path_deps_do_rmd(readLines(path), basename(path))
Output
# A data frame: 2 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 header.Rmd p1 p1 * prod p1::fun 4 14 32
2 header.Rmd p2 p2 * prod library(p2) 7 14 81
scan_path_deps_do_header_shiny_hits
Code
scan_path_deps_do_rmd(readLines(path), basename(path))
Output
# A data frame: 4 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 header-shiny.Rmd shiny shiny * prod "shiny" 4 11 26
2 header-shiny.Rmd shiny shiny * prod "'shiny'" 5 9 40
3 header-shiny.Rmd shiny shiny * prod "\"shiny\"" 6 11 58
4 header-shiny.Rmd shiny shiny * prod "|\n shiny" 7 9 74
Code
scan_path_deps_do_rmd(readLines(path), basename(path))
Output
# A data frame: 4 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 header-shiny2.Rmd shiny shiny * prod "shiny" 5 9 32
2 header-shiny2.Rmd shiny shiny * prod "'shiny'" 7 9 56
3 header-shiny2.Rmd shiny shiny * prod "\"shiny\"" 9 11 82
4 header-shiny2.Rmd shiny shiny * prod ">\n shiny" 11 9 106
scan_path_deps_do_header_bslib_hits
Code
scan_path_deps_do_rmd(readLines(path), basename(path))
Output
# A data frame: 1 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 header-bslib.Rmd bslib bslib * prod "output:\n html_document:\n toc: true\n theme: some theme" 4 1 16
scan_path_deps_do_dsc
Code
print(scan_path_deps_do_dsc(readLines(path), basename(path)), n = Inf)
Output
# A data frame: 42 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 DESCRIPTION callr callr >=3.3.1 prod callr 1 1 1
2 DESCRIPTION r-lib/cli cli >=3.6.0 prod r-lib/cli 1 1 1
3 DESCRIPTION curl curl * prod curl 1 1 1
4 DESCRIPTION desc desc >=1.4.3 prod desc 1 1 1
5 DESCRIPTION filelock filelock >=1.0.2 prod filelock 1 1 1
6 DESCRIPTION jsonlite jsonlite * prod jsonlite 1 1 1
7 DESCRIPTION lpSolve lpSolve * prod lpSolve 1 1 1
8 DESCRIPTION pkgbuild pkgbuild >=1.0.2 prod pkgbuild 1 1 1
9 DESCRIPTION pkgcache pkgcache >=2.2.0 prod pkgcache 1 1 1
10 DESCRIPTION processx processx >=3.4.2 prod processx 1 1 1
11 DESCRIPTION ps ps * prod ps 1 1 1
12 DESCRIPTION R6 R6 * prod R6 1 1 1
13 DESCRIPTION zip zip >=2.3.0 prod zip 1 1 1
14 DESCRIPTION asciicast asciicast >=2.2.0.9000 test asciicast 1 1 1
15 DESCRIPTION codetools codetools * test codetools 1 1 1
16 DESCRIPTION covr covr * test covr 1 1 1
17 DESCRIPTION debugme debugme * test debugme 1 1 1
18 DESCRIPTION fansi fansi * test fansi 1 1 1
19 DESCRIPTION fs fs * test fs 1 1 1
20 DESCRIPTION gh gh * test gh 1 1 1
21 DESCRIPTION gitcreds gitcreds * test gitcreds 1 1 1
22 DESCRIPTION glue glue * test glue 1 1 1
23 DESCRIPTION htmlwidgets htmlwidgets * test htmlwidgets 1 1 1
24 DESCRIPTION mockery mockery * test mockery 1 1 1
25 DESCRIPTION pak pak * test pak 1 1 1
26 DESCRIPTION pingr pingr >=2.0.0 test pingr 1 1 1
27 DESCRIPTION rmarkdown rmarkdown * test rmarkdown 1 1 1
28 DESCRIPTION rstudioapi rstudioapi * test rstudioapi 1 1 1
29 DESCRIPTION spelling spelling * test spelling 1 1 1
30 DESCRIPTION svglite svglite * test svglite 1 1 1
31 DESCRIPTION testthat testthat >=3.2.0 test testthat 1 1 1
32 DESCRIPTION tibble tibble * test tibble 1 1 1
33 DESCRIPTION webfakes webfakes >=1.1.5.9000 test webfakes 1 1 1
34 DESCRIPTION withr withr >=2.1.1 test withr 1 1 1
35 DESCRIPTION gh gh * dev gh 1 1 1
36 DESCRIPTION pkgsearch pkgsearch * dev pkgsearch 1 1 1
37 DESCRIPTION withr withr >=2.1.1 dev withr 1 1 1
38 DESCRIPTION r-lib/asciicast asciicast * test r-lib/asciicast 1 1 1
39 DESCRIPTION covr covr * test covr 1 1 1
40 DESCRIPTION r-lib/asciicast asciicast * dev r-lib/asciicast 1 1 1
41 DESCRIPTION pkgdown pkgdown >=2.0.2 dev pkgdown 1 1 1
42 DESCRIPTION tidyverse/tidytemplate tidytemplate * dev tidyverse/tidytemplate 1 1 1
scan_path_deps_do_namespace
Code
print(scan_path_deps_do_namespace(readBin(path, "raw", 10000), path), n = Inf)
Output
# A data frame: 2 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 fixtures/scan/NAMESPACE stats stats * prod stats 1 1 1
2 fixtures/scan/NAMESPACE utils utils * prod utils 1 1 1
scan_path_deps_do_{bookdown,pkgdown,quarto,renv_lock,rsconnect}
Code
scan_deps()[]
Output
# A data frame: 4 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 bookdown/_bookdown.yml bookdown bookdown * prod <NA> 1 1 1
2 _pkgdown.yml pkgdown pkgdown * prod <NA> 1 1 1
3 renv.lock renv renv * prod <NA> 1 1 1
4 rsconnect rsconnect rsconnect * prod <NA> 1 1 1
.Rproj file
Code
scan_deps(project, root = project)[]
Output
# A data frame: 2 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 pkgdepends.Rproj devtools devtools * prod PackageUseDevtools: Yes 1 1 1
2 pkgdepends.Rproj roxygen2 roxygen2 * prod PackageUseDevtools: Yes 1 1 1
scan_path_deps_do_rnw_ranges
Code
scan_path_deps_do_rnw_ranges(code)
Output
[[1]]
[1] 11 13
[[2]]
[1] 15 17
[[3]]
[1] 19 21
[[4]]
[1] 22 25
[[5]]
[1] 27 29
scan_path_deps_do_rnw_parse_chunk_header
Code
scan_path_deps_do_rnw_parse_chunk_header("")
Output
named list()
Code
scan_path_deps_do_rnw_parse_chunk_header("name")
Output
$label
[1] "name"
Code
scan_path_deps_do_rnw_parse_chunk_header(
"name, foo = 1, bar = TRUE, this = that")
Output
$label
[1] "name"
$foo
[1] 1
$bar
[1] TRUE
$this
that
.Rnw file
Code
scan_path_deps_do_rnw(readLines(path), basename(path))
Output
# A data frame: 3 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 test.Rnw cli cli * prod library(cli) 1 1 1
2 test.Rnw filelock filelock * prod filelock::lock 1 1 1
3 test.Rnw pak pak * prod library(pak) 2 1 43
Code
scan_path_deps_do(readLines(path), basename(path))
Output
# A data frame: 3 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 test.Rnw cli cli * prod library(cli) 1 1 1
2 test.Rnw filelock filelock * prod filelock::lock 1 1 1
3 test.Rnw pak pak * prod library(pak) 2 1 43
Ignored chunks in .Rnw file
Code
scan_path_deps_do(readBin(path, "raw", file.size(path)), basename(path))
Output
# A data frame: 6 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 ignore-test.Rnw good good * prod library(good) 1 1 1
2 ignore-test.Rnw butthisisgood butthisisgood * prod library(butthisisgood) 1 1 1
3 ignore-test.Rnw butthisisgood butthisisgood * prod library(butthisisgood) 1 1 1
4 ignore-test.Rnw good good * prod library(good) 1 1 1
5 ignore-test.Rnw good good * prod library(good) 1 1 1
6 ignore-test.Rnw good good * prod library(good) 1 1 1
IPython notebook
Code
scan_path_deps_do(readLines(path), basename(path))
Output
# A data frame: 4 x 9
path ref package version type code start_row start_column start_byte
<chr> <chr> <chr> <chr> <chr> <chr> <int> <int> <int>
1 notebook.ipynb IRkernel IRkernel * prod <NA> 1 1 1
2 notebook.ipynb MASS MASS * prod library(MASS) 1 1 1
3 notebook.ipynb stats stats * prod stats::setNames 1 1 1
4 notebook.ipynb cli cli * prod cli::cli_text 2 1 19
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