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revdep/failures.md

revdep/failures.md
In r-lib/roxygen2: In-Line Documentation for R

airpart

Run revdepcheck::cloud_details(, "airpart") for more info

Error before installation

Devel

CRAN

annotatr

Run revdepcheck::cloud_details(, "annotatr") for more info

Error before installation

Devel

CRAN

bacon

Run revdepcheck::cloud_details(, "bacon") for more info

Error before installation

Devel

CRAN

biodb

Run revdepcheck::cloud_details(, "biodb") for more info

Error before installation

Devel

CRAN

biodbChebi

Run revdepcheck::cloud_details(, "biodbChebi") for more info

Error before installation

Devel

CRAN

biodbExpasy

Run revdepcheck::cloud_details(, "biodbExpasy") for more info

Error before installation

Devel

CRAN

biodbHmdb

Run revdepcheck::cloud_details(, "biodbHmdb") for more info

Error before installation

Devel

CRAN

biodbKegg

Run revdepcheck::cloud_details(, "biodbKegg") for more info

Error before installation

Devel

CRAN

biodbLipidmaps

Run revdepcheck::cloud_details(, "biodbLipidmaps") for more info

Error before installation

Devel

CRAN

biodbMirbase

Run revdepcheck::cloud_details(, "biodbMirbase") for more info

Error before installation

Devel

CRAN

biodbNcbi

Run revdepcheck::cloud_details(, "biodbNcbi") for more info

Error before installation

Devel

CRAN

biodbNci

Run revdepcheck::cloud_details(, "biodbNci") for more info

Error before installation

Devel

CRAN

biodbUniprot

Run revdepcheck::cloud_details(, "biodbUniprot") for more info

Error before installation

Devel

CRAN

biscuiteer

Run revdepcheck::cloud_details(, "biscuiteer") for more info

Error before installation

Devel

CRAN

CBEA

Run revdepcheck::cloud_details(, "CBEA") for more info

Error before installation

Devel

CRAN

celda

Run revdepcheck::cloud_details(, "celda") for more info

Error before installation

Devel

CRAN

cfdnakit

Run revdepcheck::cloud_details(, "cfdnakit") for more info

Error before installation

Devel

CRAN

chimeraviz

Run revdepcheck::cloud_details(, "chimeraviz") for more info

Error before installation

Devel

CRAN

chipenrich

Run revdepcheck::cloud_details(, "chipenrich") for more info

Error before installation

Devel

CRAN

chipenrich.data

Run revdepcheck::cloud_details(, "chipenrich.data") for more info

Error before installation

Devel

CRAN

circRNAprofiler

Run revdepcheck::cloud_details(, "circRNAprofiler") for more info

Error before installation

Devel

CRAN

deconvR

Run revdepcheck::cloud_details(, "deconvR") for more info

Error before installation

Devel

CRAN

decoupleR

Run revdepcheck::cloud_details(, "decoupleR") for more info

Error before installation

Devel

CRAN

DEXSeq

Run revdepcheck::cloud_details(, "DEXSeq") for more info

Error before installation

Devel

CRAN

EpiDISH

Run revdepcheck::cloud_details(, "EpiDISH") for more info

Error before installation

Devel

CRAN

epivizr

Run revdepcheck::cloud_details(, "epivizr") for more info

Error before installation

Devel

CRAN

epivizrChart

Run revdepcheck::cloud_details(, "epivizrChart") for more info

Error before installation

Devel

CRAN

epivizrData

Run revdepcheck::cloud_details(, "epivizrData") for more info

Error before installation

Devel

CRAN

GenomicSuperSignature

Run revdepcheck::cloud_details(, "GenomicSuperSignature") for more info

Error before installation

Devel

CRAN

GenVisR

Run revdepcheck::cloud_details(, "GenVisR") for more info

Error before installation

Devel

CRAN

GEOfastq

Run revdepcheck::cloud_details(, "GEOfastq") for more info

Error before installation

Devel

CRAN

geva

Run revdepcheck::cloud_details(, "geva") for more info

Error before installation

Devel

CRAN

GladiaTOX

Run revdepcheck::cloud_details(, "GladiaTOX") for more info

Error before installation

Devel

CRAN

HMP16SData

Run revdepcheck::cloud_details(, "HMP16SData") for more info

Error before installation

Devel

CRAN

HMP2Data

Run revdepcheck::cloud_details(, "HMP2Data") for more info

Error before installation

Devel

CRAN

idr2d

Run revdepcheck::cloud_details(, "idr2d") for more info

Error before installation

Devel

CRAN

ISAnalytics

Run revdepcheck::cloud_details(, "ISAnalytics") for more info

Error before installation

Devel

CRAN

LRcell

Run revdepcheck::cloud_details(, "LRcell") for more info

Error before installation

Devel

CRAN

LRcellTypeMarkers

Run revdepcheck::cloud_details(, "LRcellTypeMarkers") for more info

Error before installation

Devel

CRAN

MAST

Run revdepcheck::cloud_details(, "MAST") for more info

Error before installation

Devel

CRAN

MMAPPR2data

Run revdepcheck::cloud_details(, "MMAPPR2data") for more info

Error before installation

Devel

CRAN

MobilityTransformR

Run revdepcheck::cloud_details(, "MobilityTransformR") for more info

Error before installation

Devel

CRAN

Moonlight2R

Run revdepcheck::cloud_details(, "Moonlight2R") for more info

Error before installation

Devel

CRAN

MoonlightR

Run revdepcheck::cloud_details(, "MoonlightR") for more info

Error before installation

Devel

CRAN

MsBackendMassbank

Run revdepcheck::cloud_details(, "MsBackendMassbank") for more info

Error before installation

Devel

CRAN

MsBackendMgf

Run revdepcheck::cloud_details(, "MsBackendMgf") for more info

Error before installation

Devel

CRAN

MsBackendMsp

Run revdepcheck::cloud_details(, "MsBackendMsp") for more info

Error before installation

Devel

CRAN

MsBackendSql

Run revdepcheck::cloud_details(, "MsBackendSql") for more info

Error before installation

Devel

CRAN

MsCoreUtils

Run revdepcheck::cloud_details(, "MsCoreUtils") for more info

Error before installation

Devel

CRAN

MsExperiment

Run revdepcheck::cloud_details(, "MsExperiment") for more info

Error before installation

Devel

CRAN

MsFeatures

Run revdepcheck::cloud_details(, "MsFeatures") for more info

Error before installation

Devel

CRAN

msgbsR

Run revdepcheck::cloud_details(, "msgbsR") for more info

Error before installation

Devel

CRAN

mslp

Run revdepcheck::cloud_details(, "mslp") for more info

Error before installation

Devel

CRAN

MSnbase

Run revdepcheck::cloud_details(, "MSnbase") for more info

Error before installation

Devel

CRAN

NormalyzerDE

Run revdepcheck::cloud_details(, "NormalyzerDE") for more info

Error before installation

Devel

CRAN

ompBAM

Run revdepcheck::cloud_details(, "ompBAM") for more info

Error before installation

Devel

CRAN

pasilla

Run revdepcheck::cloud_details(, "pasilla") for more info

Error before installation

Devel

CRAN

pRoloc

Run revdepcheck::cloud_details(, "pRoloc") for more info

Error before installation

Devel

CRAN

rstanarm

Run revdepcheck::cloud_details(, "rstanarm") for more info

In both

Installation

Devel

* installing *source* package ‘rstanarm’ ...
** package ‘rstanarm’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’
using C++17
"/opt/R/4.3.1/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/lm.stan
Wrote C++ file "stan_files/lm.cc"


...
stan_files/mvmer.hpp: In constructor ‘model_mvmer_namespace::model_mvmer::model_mvmer(stan::io::var_context&, unsigned int, std::ostream*)’:
stan_files/mvmer.hpp:5105:3: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without
 5105 |   model_mvmer(stan::io::var_context& context__,
      |   ^~~~~~~~~~~
g++: fatal error: Killed signal terminated program cc1plus
compilation terminated.
make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stan_files/mvmer.o] Error 1
rm stan_files/lm.cc stan_files/mvmer.cc
ERROR: compilation failed for package ‘rstanarm’
* removing ‘/tmp/workdir/rstanarm/new/rstanarm.Rcheck/rstanarm’

CRAN

* installing *source* package ‘rstanarm’ ...
** package ‘rstanarm’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’
using C++17
"/opt/R/4.3.1/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/lm.stan
Wrote C++ file "stan_files/lm.cc"


...
stan_files/mvmer.hpp: In constructor ‘model_mvmer_namespace::model_mvmer::model_mvmer(stan::io::var_context&, unsigned int, std::ostream*)’:
stan_files/mvmer.hpp:5105:3: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without
 5105 |   model_mvmer(stan::io::var_context& context__,
      |   ^~~~~~~~~~~
g++: fatal error: Killed signal terminated program cc1plus
compilation terminated.
make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stan_files/mvmer.o] Error 1
rm stan_files/lm.cc stan_files/mvmer.cc
ERROR: compilation failed for package ‘rstanarm’
* removing ‘/tmp/workdir/rstanarm/old/rstanarm.Rcheck/rstanarm’

sparsenetgls

Run revdepcheck::cloud_details(, "sparsenetgls") for more info

Error before installation

Devel

CRAN

Spectra

Run revdepcheck::cloud_details(, "Spectra") for more info

Error before installation

Devel

CRAN

SpidermiR

Run revdepcheck::cloud_details(, "SpidermiR") for more info

Error before installation

Devel

CRAN

StarBioTrek

Run revdepcheck::cloud_details(, "StarBioTrek") for more info

Error before installation

Devel

CRAN

STATegRa

Run revdepcheck::cloud_details(, "STATegRa") for more info

Error before installation

Devel

CRAN

StructuralVariantAnnotation

Run revdepcheck::cloud_details(, "StructuralVariantAnnotation") for more info

Error before installation

Devel

CRAN

svaNUMT

Run revdepcheck::cloud_details(, "svaNUMT") for more info

Error before installation

Devel

CRAN

svaRetro

Run revdepcheck::cloud_details(, "svaRetro") for more info

Error before installation

Devel

CRAN

transite

Run revdepcheck::cloud_details(, "transite") for more info

Error before installation

Devel

CRAN

transomics2cytoscape

Run revdepcheck::cloud_details(, "transomics2cytoscape") for more info

Error before installation

Devel

CRAN

valse

Run revdepcheck::cloud_details(, "valse") for more info

In both

Installation

Devel

* installing *source* package ‘valse’ ...
** package ‘valse’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’
gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -c EMGLLF.c -o EMGLLF.o
gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -c EMGrank.c -o EMGrank.o
gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -c a.EMGLLF.c -o a.EMGLLF.o
gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -c a.EMGrank.c -o a.EMGrank.o
gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -c valse_init.c -o valse_init.o
...
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘valse’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/tmp/workdir/valse/new/valse.Rcheck/00LOCK-valse/00new/valse/libs/valse.so':
  /tmp/workdir/valse/new/valse.Rcheck/00LOCK-valse/00new/valse/libs/valse.so: undefined symbol: gsl_vector_free
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/tmp/workdir/valse/new/valse.Rcheck/valse’

CRAN

* installing *source* package ‘valse’ ...
** package ‘valse’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’
gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -c EMGLLF.c -o EMGLLF.o
gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -c EMGrank.c -o EMGrank.o
gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -c a.EMGLLF.c -o a.EMGLLF.o
gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -c a.EMGrank.c -o a.EMGrank.o
gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -c valse_init.c -o valse_init.o
...
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘valse’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/tmp/workdir/valse/old/valse.Rcheck/00LOCK-valse/00new/valse/libs/valse.so':
  /tmp/workdir/valse/old/valse.Rcheck/00LOCK-valse/00new/valse/libs/valse.so: undefined symbol: gsl_vector_free
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/tmp/workdir/valse/old/valse.Rcheck/valse’

waddR

Run revdepcheck::cloud_details(, "waddR") for more info

Error before installation

Devel

CRAN


r-lib/roxygen2 documentation built on April 21, 2024, 4:36 a.m.

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