Man pages for rOpenHealth/rpubmed
rpubmed
| abstract_to_text | concatenates abstract list to a single string |
| chunker | Helper function to split a vector v into list of chunks of... |
| entrez_email | Set global variables |
| fetch_in_chunks | Downloads abstracts and Metadata from Pubmed, storing as R... |
| geocode | Helper function for geocode_address |
| geocode_address | Function to get coordinates from a supplied address If no... |
| geocode_addresses | Returns a data frame of geocoded addresses with longitude and... |
| get_article_location_data | Extracts addresses of affiliated departments from Pubmed... |
| get_articles_by_terms | Returns a list of articles matching the termlist items in the... |
| get_mesh_headings | Returns a list of MeSH headings for an article |
| in_abstract_p | predicate function for searching abstracts |
| in_mesh_abstract_p | predicate function for searching abstracts and MeSH headings |
| in_mesh_headings_p | predicate function for searching MeSH headings |
| in_record_text_p | predicate function for searching in title and abstract |
| keyword_assoc_table | Builds an association table for a character vector of search... |
| mesh_assoc_table | Builds an association matrix for all MeSH terms in an article... |
| mesh_heading_frequency | Returns a data frame of all MeSH headings in a corpus, with... |
| mesh_table | helper function for mesh_assoc_table |
| mesh_to_text | concatenates a list of MeSH headings to a single string |
| pubmed_fetch | Download data from Pubmed |
| read_article_json | Redundant wrapper around fromJSON |
| record_counts_by_year | Gives a breakdown of records per year in a corpus of Pubmed... |
| term_in_text_p | predicate function for presence of a term in an article text |
| title_to_text | concatenates a list of MeSH headings to a single string |
| write_JSON_file | Write a list of (e.g.) Pubmed records (e.g.) from... |
| write_record_list | Writes article title and citation data to file or stdout.... |
