pubmed_fetch: Download data from Pubmed
In rOpenHealth/rpubmed: rpubmed

Description Usage Arguments Value Examples

Download data from Pubmed

1	pubmed_fetch(ids, file_format = "xml", as_r_object = TRUE, ...)

`ids`	integer Pubmed ID's to get abstracts and metadata from
`file_format`	character Format in which to get data (eg, fasta, xml...) default = "xml"
`as_r_object`	boolean if TRUE, parses returned xml to R objects (nested lists), else returns xml
`...`	character Additional terms to add to the request

list or character string containing abstratcs and metadata for each ID (see as_r_object)

## Not run: 
# Get IDs via rentrez_search:
plasticity_ids <- entrez_search("pubmed", "phenotypic plasticity", retmax = 2600)$ids[1:100]
plasticity_records <- pubmed_fetch(plasticity_ids)

## End(Not run)