README.md

In rachelss/rrelrates: Gets Relative Rates on the Primate Phylogeny as Described by Tamura et al. 2012

rrelrates

Produce relative rates on from trees using the reltime method of Tamura et al. 2012.

This package is a work in progress. Currently it is limited to primates and data available in ensembl. You can install the package via devtools

devtools::install_github("rachelss/rrelrates")

You must also install the following dependencies:

devtools::install_github("dwinter/rensembl")
source("http://bioconductor.org/biocLite.R")
biocLite(c("GO.db", "biomaRt"))

Examples

Mean and Variance of the relative rates

geneinfo("CCND1")
#> [1] "CCND1"

#> $CCND1_ENSPPYP00000003434_Pabe
#> [1] 2.232375
#> 
#> $mean
#> [1] 0.9768734
#> 
#> $var
#> [1] 0.3532899

rachelss/rrelrates documentation built on May 26, 2019, 8:52 p.m.