decendDist: Get the relative rates of two decendant branches.
In rachelss/rrelrates: Gets Relative Rates on the Primate Phylogeny as Described by Tamura et al. 2012
Description
Usage
Arguments
References
Description
Get the relative rates of two decendant branches.
Usage
1
decendDist(bnode, t, finalrates)
Arguments
bnode
a node in the tree with two decendants
t
the tree
finalrates
ancestral relative rates, which are used as multipliers
Method:
Get the average distance from bnode to all decendant tips (avgdist).
For each of bnode's direct child nodes (c1,c2):
Get the total distance from this node to each tip (c1dist,c2dist).
Divide this total by avgdist (rate1,rate2).
If bnode is not the root node:
Multiply each rate by the ancestor relative rate.
References
Tamura et al. 2012 PNAS
rachelss/rrelrates documentation built on May 26, 2019, 8:52 p.m.
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Description Usage Arguments References
Description
Get the relative rates of two decendant branches.
Usage
1 | decendDist(bnode, t, finalrates)
|
Arguments
bnode |
a node in the tree with two decendants |
t |
the tree |
finalrates |
ancestral relative rates, which are used as multipliers Method: Get the average distance from bnode to all decendant tips (avgdist). For each of bnode's direct child nodes (c1,c2): Get the total distance from this node to each tip (c1dist,c2dist). Divide this total by avgdist (rate1,rate2). If bnode is not the root node: Multiply each rate by the ancestor relative rate. |
References
Tamura et al. 2012 PNAS
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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