API for rachelwarnock/fossilsim
Simulation of Fossil and Taxonomy Data

Global functions
FossilSim Man page
FossilSim-package Man page
SAtree Man page Source code
SAtree.from.fossils Man page Source code
add.depth.profile Source code
ancestor Source code
as.fossils Man page Source code
as.fossils.default Source code
as.taxonomy Man page Source code
as.taxonomy.default Source code
assign.interval Source code
asymmetric.identities Source code
beast.fbd.format Man page Source code
bind.to.tip Source code
count.fossils Man page Source code
count.fossils.binned Man page Source code
edge.end Source code
edge.start Source code
fetch.descendants Source code
find.edges.inbetween Source code
find.species.in.taxonomy Source code
fossils Man page Source code
fossils.to.BEAST.constraints Man page Source code
fossils.to.BEAST.start.tree Man page Source code
fossils.to.paleotree.record Man page Source code
fossils.to.pyrate Man page Source code
get.dec.nodes Source code
get.tip.descs Man page Source code
is.extant Source code
is.extinct Source code
is.fossils Man page Source code
is.root Source code
is.taxonomy Man page Source code
is.tip Source code
map_nodes Source code
n.ages Source code
paleotree.record.to.fossils Man page Source code
place.fossils Man page Source code
plot.fossils Man page Source code
plot.taxonomy Man page Source code
print.fossils Source code
print.taxonomy Source code
prune.fossil.tips Man page Source code
prune.fossils Man page Source code
rangeplot.asymmetric Man page Source code
reconcile.fossils.taxonomy Man page Source code
remove.stem.fossils Man page Source code
remove.stem.lineages Man page Source code
root Source code
sampled.tree.from.combined Man page Source code
sim.anagenetic.species Man page Source code
sim.cryptic.species Man page Source code
sim.extant.samples Man page Source code
sim.fbd.age Man page Source code
sim.fbd.rateshift.taxa Man page Source code
sim.fbd.taxa Man page Source code
sim.fossils.environment Man page Source code
sim.fossils.exponential Source code
sim.fossils.intervals Man page Source code
sim.fossils.poisson Man page Source code
sim.gradient Man page Source code
sim.interval.ages Man page Source code
sim.taxonomy Man page Source code
sim.tip.samples Man page Source code
sim.trait.values Man page Source code
sim.uncertain.ages Source code
species.end Man page Source code
species.record.from.taxonomy Source code
species.start Man page Source code
subsample.fossils.oldest Man page Source code
subsample.fossils.oldest.and.youngest Man page Source code
subsample.fossils.uniform Man page Source code
subsample.fossils.youngest Man page Source code
summary.fossils Source code
summary.taxonomy Man page Source code
taxonomy Man page Source code
tree.max Man page Source code
untangle Source code
rachelwarnock/fossilsim documentation built on Nov. 11, 2018, 4:01 a.m.