Read.PyRAD.Alleles1: Read.PyRAD.Alleles1.R Function to read the alignments of a...
In radamsRHA/Misc.Statistics.Genetics.Models:

The function returns a list of alignments obtained from a *.alleles file generated by pyRAD

1	Read.PyRAD.Alleles1(alleles.file, popID)

alleles.file

*.alleles file that is generated by pyRAD

library(AlnStats)
library(stringr)

EXAMPLE
S.data <- Calc.S(alleles.data = aln.data)
hist(S.data$theta.hat.vec)
hist(S.data$S.vec)

radamsRHA/Misc.Statistics.Genetics.Models documentation built on May 5, 2019, 6:56 p.m.

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