Function_ComputePairwiseDistances_SimulateTips_Depth: Function_ComputePairwiseDistances_SimulateTips_Depth:...

In radamsRHA/PRDATR: Computing probabilistic distances between phylogenetic models of continuous trait evolution

Description

This function returns a list with (1) matrix.PairwiseDistances_H, (2) matrix.PairwiseDistances_KL, and (3)vector.PairwiseDistances_H

Usage

Function_ComputePairwiseDistances_SimulateTips_Depth(
  numeric.NumberReps,
  numeric.n,
  numeric.birth,
  string.Model,
  vector.Theta
)

Arguments

numeric.NumberReps	Number of simulation replicates
numeric.n	Number of tips
numeric.birth	Birth Rate
string.Model	String for evolutonary model

Value

List list with (1) matrix.PairwiseDistances_H, (2) matrix.PairwiseDistances_KL, and (3)vector.PairwiseDistances_H

Examples

################################
# Simulate datasets with n = 3 #
################################
vector.Theta <- c(1, 1)
names(vector.Theta) <- c("Sig2", "alpha")
list.RESULTS_n3_b1_a1 <- Function_ComputePairwiseDistances_SimulateTips(numeric.NumberReps = 100,
                                                                        numeric.n = 3, numeric.birth = 1,
                                                                        string.Model = "OU",
                                                                        vector.Theta = vector.Theta)$vector.PairwiseDistances_H

radamsRHA/PRDATR documentation built on Dec. 25, 2021, 11:44 a.m.