API for radamsRHA/SpeciesTopoTestR
Likelihood-based tests of species topologies in R
| Global functions | |
|---|---|
| Compute.GeneTree_Likelihoods | Man page Source code |
| Compute.GeneTree_Likelihoods_SpeciesNetwork | Man page Source code |
| Conduct.KH_1 | Man page Source code |
| Conduct.KH_1N | Man page Source code |
| Conduct.KH_2 | Man page Source code |
| Conduct.KH_2N | Man page Source code |
| Conduct.KH_3 | Man page Source code |
| Conduct.KH_3N | Man page Source code |
| Conduct.SH_1 | Man page Source code |
| Conduct.SH_1N | Man page Source code |
| Conduct.SH_2 | Man page Source code |
| Conduct.SH_2N | Man page Source code |
| Conduct.SOWH_1 | Man page Source code |
| Conduct.SOWH_1N | Man page Source code |
| Conduct.SOWH_2 | Man page Source code |
| Conduct.SOWH_2N | Man page Source code |
| Conduct.SOWH_2v2 | Man page Source code |
| Conduct.SOWH_2v3 | Man page Source code |
| Conduct.SpeciesTopoTestR | Man page Source code |
| Estimate.GeneTrees_IqTree | Man page Source code |
| Optimize.BranchLengths | Man page Source code |
| Optimize.Network | Man page Source code |
| Optimize.NetworkSearch | Man page Source code |
| Optimize.TopologySearch | Man page Source code |
| Resample.Bootstrap_GeneTree_Replicates_NP | Man page Source code |
| Simulate.GeneSequenceAlignments | Man page Source code |
| Simulate.GeneTrees_From_SpeciesNetwork | Man page Source code |
| Simulate.GeneTrees_From_SpeciesNetwork_MS | Man page Source code |
| Simulate.GeneTrees_From_SpeciesTree | Man page Source code |
| Simulate.GeneTrees_From_SpeciesTree2 | Man page Source code |
| Simulate.GeneTrees_From_SpeciesTree3 | Man page Source code |
