Files in radamsRHA/SpeciesTopoTestR
Likelihood-based tests of species topologies in R
.DS_Store
.Rproj.user/1E807199/cpp-definition-cache.bz2
.Rproj.user/1E807199/pcs/files-pane.pper.bz2
.Rproj.user/1E807199/pcs/source-pane.pper.bz2
.Rproj.user/1E807199/pcs/windowlayoutstate.pper.bz2
.Rproj.user/1E807199/pcs/workbench-pane.pper.bz2
.Rproj.user/1E807199/rmd-outputs.bz2
.Rproj.user/1E807199/saved_source_markers.bz2
.Rproj.user/shared/notebooks/patch-chunk-names.bz2
DESCRIPTION
NAMESPACE
R/.DS_Store.bz2
R/Compute.GeneTree_Likelihoods.R
R/Compute.GeneTree_Likelihoods_SpeciesNetwork.R
R/Conduct.KH_1.R
R/Conduct.KH_1N.R
R/Conduct.KH_2.R
R/Conduct.KH_2N.R
R/Conduct.KH_3.R
R/Conduct.KH_3N.R
R/Conduct.SH_1.R
R/Conduct.SH_1N.R
R/Conduct.SH_2.R
R/Conduct.SH_2N.R
R/Conduct.SOWH_1.R
R/Conduct.SOWH_1N.R
R/Conduct.SOWH_2.R
R/Conduct.SOWH_2N.R
R/Conduct.SOWH_2v2.R
R/Conduct.SOWH_2v3.R
R/Conduct.SpeciesTopoTestR.R
R/Estimate.GeneTrees_IqTree.R
R/Optimize.BranchLengths.R
R/Optimize.Network.R
R/Optimize.NetworkSearch.R
R/Optimize.TopologySearch.R
R/Resample.Bootstrap_GeneTree_Replicates_NP.R
R/Simulate.GeneSequenceAlignments.R
R/Simulate.GeneTrees_From_SpeciesNetwork.R
R/Simulate.GeneTrees_From_SpeciesNetwork_MS.R
R/Simulate.GeneTrees_From_SpeciesTree.R
R/Simulate.GeneTrees_From_SpeciesTree2.R
R/Simulate.GeneTrees_From_SpeciesTree3.R
README.html
README.md
SpeciesTopoTestR.Rproj
SpeciesTopoTestR.pdf
inst/.DS_Store.bz2
inst/extdata/.DS_Store.bz2
inst/extdata/ExampleGeneTreeSet.tree
inst/extdata/PhyloNet_3.8.0.jar
inst/extdata/STELLS2-master.zip
man/Compute.GeneTree_Likelihoods.Rd
man/Compute.GeneTree_Likelihoods_SpeciesNetwork.Rd
man/Conduct.KH_1.Rd
man/Conduct.KH_1N.Rd
man/Conduct.KH_2.Rd
man/Conduct.KH_2N.Rd
man/Conduct.KH_3.Rd
man/Conduct.KH_3N.Rd
man/Conduct.SH_1.Rd
man/Conduct.SH_1N.Rd
man/Conduct.SH_2.Rd
man/Conduct.SH_2N.Rd
man/Conduct.SOWH_1.Rd
man/Conduct.SOWH_1N.Rd
man/Conduct.SOWH_2.Rd
man/Conduct.SOWH_2N.Rd
man/Conduct.SOWH_2v2.Rd
man/Conduct.SOWH_2v3.Rd
man/Conduct.SpeciesTopoTestR.Rd
man/Estimate.GeneTrees_IqTree.Rd
man/Optimize.BranchLengths.Rd
man/Optimize.Network.Rd
man/Optimize.NetworkSearch.Rd
man/Optimize.TopologySearch.Rd
man/Resample.Bootstrap_GeneTree_Replicates_NP.Rd
man/Simulate.GeneSequenceAlignments.Rd
man/Simulate.GeneTrees_From_SpeciesNetwork.Rd
man/Simulate.GeneTrees_From_SpeciesNetwork_MS.Rd
man/Simulate.GeneTrees_From_SpeciesTree.Rd
man/Simulate.GeneTrees_From_SpeciesTree2.Rd
man/Simulate.GeneTrees_From_SpeciesTree3.Rd
