Files in raerose01/deconstructSigs
Identifies Signatures Present in a Tumor Sample
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/.DS_Store
R/datasets.R
R/deconstructSigs.R
R/globalVariables.R
R/golden_section_search.R
R/internal.scripts.R
R/mut.to.sigs.input.R
R/normalize.data.R
R/plotting.R
R/vcf.to.sigs.input.R
R/whichSignatures.R
README.Rmd
README.md
README.pdf
cran-comments.md
data/dbs_possible.rda
data/example.output.rda
data/randomly.generated.tumors.rda
data/sample.mut.ref.rda
data/signatures.cosmic.rda
data/signatures.dbs.cosmic.v3.may2019.rda
data/signatures.exome.cosmic.v3.may2019.rda
data/signatures.genome.cosmic.v3.may2019.rda
data/signatures.nature2013.rda
data/tri.counts.exome.rda
data/tri.counts.genome.rda
deconstructSigs.Rproj
deconstructSigs_1.9.0.tar.gz
inst/extdata/makePie.png
inst/extdata/plotSignatures.png
man/changeColumnNames.Rd
man/dbs_possible.Rd
man/deconstructSigs.Rd
man/example.output.Rd
man/findSeed.Rd
man/formatContexts.Rd
man/getError.Rd
man/getTriContextFraction.Rd
man/golden.section.search.Rd
man/makePie.Rd
man/mut.to.sigs.input.Rd
man/norm.it.Rd
man/plotSignatures.Rd
man/plotTumor.Rd
man/randomly.generated.tumors.Rd
man/sample.mut.ref.Rd
man/signatures.cosmic.Rd
man/signatures.dbs.cosmic.v3.may2019.Rd
man/signatures.exome.cosmic.v3.may2019.Rd
man/signatures.genome.cosmic.v3.may2019.Rd
man/signatures.nature2013.Rd
man/tri.counts.exome.Rd
man/tri.counts.genome.Rd
man/updateW_GR.Rd
man/vcf.to.sigs.input.Rd
man/whichSignatures.Rd
revdep/README.md
revdep/check.R
revdep/checks.rds
revdep/problems.md
tests/Simulated_profiles.Rmd
tests/Simulated_profiles.html
tests/Simulated_profiles_60_20_5.pdf
tests/Simulated_profiles_70_20_5.pdf
tests/Simulated_profiles_files/bootstrap-3.3.5/css/bootstrap-theme.css
tests/Simulated_profiles_files/bootstrap-3.3.5/css/bootstrap-theme.css.map
tests/Simulated_profiles_files/bootstrap-3.3.5/css/bootstrap-theme.min.css
tests/Simulated_profiles_files/bootstrap-3.3.5/css/bootstrap.css
tests/Simulated_profiles_files/bootstrap-3.3.5/css/bootstrap.css.map
tests/Simulated_profiles_files/bootstrap-3.3.5/css/bootstrap.min.css
tests/Simulated_profiles_files/bootstrap-3.3.5/css/cerulean.min.css
tests/Simulated_profiles_files/bootstrap-3.3.5/css/cosmo.min.css
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tests/Simulated_profiles_files/highlight/highlight.js
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tests/Simulated_profiles_files/navigation-1.0/tabsets.js
tests/simulated_profiles_60.rda
tests/simulated_profiles_70.rda
