Files in raerose01/deconstructSigs
Identifies Signatures Present in a Tumor Sample

.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/.DS_Store
R/datasets.R R/deconstructSigs.R R/globalVariables.R R/golden_section_search.R R/internal.scripts.R R/mut.to.sigs.input.R R/normalize.data.R R/plotting.R R/vcf.to.sigs.input.R R/whichSignatures.R README.Rmd README.md README.pdf cran-comments.md
data/dbs_possible.rda
data/example.output.rda
data/randomly.generated.tumors.rda
data/sample.mut.ref.rda
data/signatures.cosmic.rda
data/signatures.dbs.cosmic.v3.may2019.rda
data/signatures.exome.cosmic.v3.may2019.rda
data/signatures.genome.cosmic.v3.may2019.rda
data/signatures.nature2013.rda
data/tri.counts.exome.rda
data/tri.counts.genome.rda
deconstructSigs.Rproj
deconstructSigs_1.9.0.tar.gz
inst/extdata/makePie.png
inst/extdata/plotSignatures.png
man/changeColumnNames.Rd man/dbs_possible.Rd man/deconstructSigs.Rd man/example.output.Rd man/findSeed.Rd man/formatContexts.Rd man/getError.Rd man/getTriContextFraction.Rd man/golden.section.search.Rd man/makePie.Rd man/mut.to.sigs.input.Rd man/norm.it.Rd man/plotSignatures.Rd man/plotTumor.Rd man/randomly.generated.tumors.Rd man/sample.mut.ref.Rd man/signatures.cosmic.Rd man/signatures.dbs.cosmic.v3.may2019.Rd man/signatures.exome.cosmic.v3.may2019.Rd man/signatures.genome.cosmic.v3.may2019.Rd man/signatures.nature2013.Rd man/tri.counts.exome.Rd man/tri.counts.genome.Rd man/updateW_GR.Rd man/vcf.to.sigs.input.Rd man/whichSignatures.Rd revdep/README.md revdep/check.R
revdep/checks.rds
revdep/problems.md tests/Simulated_profiles.Rmd
tests/Simulated_profiles.html
tests/Simulated_profiles_60_20_5.pdf tests/Simulated_profiles_70_20_5.pdf
tests/Simulated_profiles_files/bootstrap-3.3.5/css/bootstrap-theme.css
tests/Simulated_profiles_files/bootstrap-3.3.5/css/bootstrap-theme.css.map
tests/Simulated_profiles_files/bootstrap-3.3.5/css/bootstrap-theme.min.css
tests/Simulated_profiles_files/bootstrap-3.3.5/css/bootstrap.css
tests/Simulated_profiles_files/bootstrap-3.3.5/css/bootstrap.css.map
tests/Simulated_profiles_files/bootstrap-3.3.5/css/bootstrap.min.css
tests/Simulated_profiles_files/bootstrap-3.3.5/css/cerulean.min.css
tests/Simulated_profiles_files/bootstrap-3.3.5/css/cosmo.min.css
tests/Simulated_profiles_files/bootstrap-3.3.5/css/flatly.min.css
tests/Simulated_profiles_files/bootstrap-3.3.5/css/fonts/Lato.ttf
tests/Simulated_profiles_files/bootstrap-3.3.5/css/fonts/LatoBold.ttf
tests/Simulated_profiles_files/bootstrap-3.3.5/css/fonts/LatoItalic.ttf
tests/Simulated_profiles_files/bootstrap-3.3.5/css/fonts/NewsCycle.ttf
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tests/Simulated_profiles_files/bootstrap-3.3.5/css/fonts/OpenSans.ttf
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tests/Simulated_profiles_files/bootstrap-3.3.5/css/fonts/OpenSansItalic.ttf
tests/Simulated_profiles_files/bootstrap-3.3.5/css/fonts/OpenSansLight.ttf
tests/Simulated_profiles_files/bootstrap-3.3.5/css/fonts/OpenSansLightItalic.ttf
tests/Simulated_profiles_files/bootstrap-3.3.5/css/fonts/Raleway.ttf
tests/Simulated_profiles_files/bootstrap-3.3.5/css/fonts/RalewayBold.ttf
tests/Simulated_profiles_files/bootstrap-3.3.5/css/fonts/Roboto.ttf
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tests/Simulated_profiles_files/bootstrap-3.3.5/css/fonts/RobotoLight.ttf
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tests/Simulated_profiles_files/bootstrap-3.3.5/css/fonts/SourceSansPro.ttf
tests/Simulated_profiles_files/bootstrap-3.3.5/css/fonts/SourceSansProBold.ttf
tests/Simulated_profiles_files/bootstrap-3.3.5/css/fonts/SourceSansProItalic.ttf
tests/Simulated_profiles_files/bootstrap-3.3.5/css/fonts/SourceSansProLight.ttf
tests/Simulated_profiles_files/bootstrap-3.3.5/css/fonts/Ubuntu.ttf
tests/Simulated_profiles_files/bootstrap-3.3.5/css/journal.min.css
tests/Simulated_profiles_files/bootstrap-3.3.5/css/lumen.min.css
tests/Simulated_profiles_files/bootstrap-3.3.5/css/paper.min.css
tests/Simulated_profiles_files/bootstrap-3.3.5/css/readable.min.css
tests/Simulated_profiles_files/bootstrap-3.3.5/css/sandstone.min.css
tests/Simulated_profiles_files/bootstrap-3.3.5/css/simplex.min.css
tests/Simulated_profiles_files/bootstrap-3.3.5/css/spacelab.min.css
tests/Simulated_profiles_files/bootstrap-3.3.5/css/united.min.css
tests/Simulated_profiles_files/bootstrap-3.3.5/css/yeti.min.css
tests/Simulated_profiles_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.eot
tests/Simulated_profiles_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.svg
tests/Simulated_profiles_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.ttf
tests/Simulated_profiles_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.woff
tests/Simulated_profiles_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.woff2
tests/Simulated_profiles_files/bootstrap-3.3.5/js/bootstrap.js
tests/Simulated_profiles_files/bootstrap-3.3.5/js/bootstrap.min.js
tests/Simulated_profiles_files/bootstrap-3.3.5/js/npm.js
tests/Simulated_profiles_files/bootstrap-3.3.5/shim/html5shiv.min.js
tests/Simulated_profiles_files/bootstrap-3.3.5/shim/respond.min.js
tests/Simulated_profiles_files/figure-html/plots-60-1.png
tests/Simulated_profiles_files/figure-html/plots-60-2.png
tests/Simulated_profiles_files/figure-html/plots-60-3.png
tests/Simulated_profiles_files/figure-html/plots-60-4.png
tests/Simulated_profiles_files/figure-html/plots-60-5.png
tests/Simulated_profiles_files/figure-html/plots-60-6.png
tests/Simulated_profiles_files/figure-html/plots-60-7.png
tests/Simulated_profiles_files/figure-html/plots-60-8.png
tests/Simulated_profiles_files/figure-html/plots-60-9.png
tests/Simulated_profiles_files/figure-html/plots-70-1.png
tests/Simulated_profiles_files/figure-html/plots-70-2.png
tests/Simulated_profiles_files/figure-html/plots-70-3.png
tests/Simulated_profiles_files/figure-html/plots-70-4.png
tests/Simulated_profiles_files/figure-html/plots-70-5.png
tests/Simulated_profiles_files/figure-html/plots-70-6.png
tests/Simulated_profiles_files/figure-html/plots-70-7.png
tests/Simulated_profiles_files/figure-html/plots-70-8.png
tests/Simulated_profiles_files/figure-html/plots-70-9.png
tests/Simulated_profiles_files/highlight/default.css
tests/Simulated_profiles_files/highlight/highlight.js
tests/Simulated_profiles_files/highlight/textmate.css
tests/Simulated_profiles_files/jquery-1.11.3/jquery.min.js
tests/Simulated_profiles_files/navigation-1.0/codefolding.js
tests/Simulated_profiles_files/navigation-1.0/tabsets.js
tests/simulated_profiles_60.rda
tests/simulated_profiles_70.rda
raerose01/deconstructSigs documentation built on Oct. 16, 2019, 6:23 p.m.