assignCellCyclePhases: Cell cycle assignment
In rajewsky-lab/dropbead: dropbead
Description
Usage
Arguments
Value
Description
Assigns the cells into the 5 cell cycle phases, following the algorithm described
in Macosko et al. 2015. The table of genes is also taken from Macosko et al. 2015.
Usage
1
2
assignCellCyclePhases(object, gene.file = "~/Desktop/cell_cycle_genes.xlsx",
do.plot = T, ...)
Arguments
object
A human or mouse SingleSpeciesSample.
gene.file
The excel sheet containing the cell cycle phase specific gene
markers. Taken from Macosko et al. 2015.
Value
A data.frame with cell cycle phase scores for every cell.
rajewsky-lab/dropbead documentation built on May 26, 2019, 10 p.m.
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Description Usage Arguments Value
Description
Assigns the cells into the 5 cell cycle phases, following the algorithm described in Macosko et al. 2015. The table of genes is also taken from Macosko et al. 2015.
Usage
1 2 | assignCellCyclePhases(object, gene.file = "~/Desktop/cell_cycle_genes.xlsx",
do.plot = T, ...)
|
Arguments
object |
A human or mouse |
gene.file |
The excel sheet containing the cell cycle phase specific gene markers. Taken from Macosko et al. 2015. |
Value
A data.frame with cell cycle phase scores for every cell.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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