compareSingleCellsAgainstBulk: Compare gene expression between single cell sample and bulk

In rajewsky-lab/dropbead: dropbead

Description

Compares the gene expression measurements from single cell data against bulk data.

Usage

compareSingleCellsAgainstBulk(single.cells, bulk.data, method = "pearson",
  ylab = "single cell sample", col = "steelblue", ...)

Arguments

single.cells	A data.frame containing genes as rownames and columns as cells.
bulk.data	A data.frame containing genes as rownames and a single column with transcript counts.
ylab	Label of the single cell sample.
col	The color of the scatterplot points.
log.space	If True (default value) then the average of single cells data is performed in log space.

Value

A scatterplot comparing the gene expression levels and with the correlation among the samples computed.

rajewsky-lab/dropbead documentation built on May 26, 2019, 10 p.m.