Files in raman91/cytofkit2
cytofkit: an integrated mass cytometry data analysis pipeline
.gitignore
DESCRIPTION
NAMESPACE
R/ClusterX.R
R/DensVM.R
R/FastPG.R
R/RcppExports.R
R/Rphenograph.R
R/cytof_cluster.R
R/cytof_dimensionReduction.R
R/cytof_postProcess.R
R/cytof_preProcess.R
R/cytof_progression.R
R/cytofkit.R
R/cytofkit_GUI.R
R/cytofkit_shinyAPP.R
R/cytofkit_shiny_dashboard.R
README.md
_config.yml
inst/CITATION
inst/NEWS.Rd
inst/extdata/130515_C2_stim_CD19-.fcs
inst/extdata/demo_fcs.RData
inst/extdata/help.gif
inst/extdata/help.png
inst/extdata/parameter.txt
inst/shiny/global.R
inst/shiny/pdf_report_template.Rmd
inst/shiny/server.R
inst/shiny/ui.R
inst/shiny/www/custom.css
inst/shiny/www/dashboard1.png
inst/shiny/www/dashboard2.png
inst/shiny/www/marketExplorer1.png
inst/shiny/www/marketExplorer2.png
inst/shiny/www/marketForecast.png
inst/shiny/www/marketForecast1.png
inst/shiny/www/marketForecast2.png
inst/shiny/www/marketForecast3.png
inst/shiny/www/marketReport.png
inst/shiny/www/modelCompare.png
inst/shiny/www/modelCompare1.png
inst/shiny/www/modelCompare2.png
inst/shiny/www/modelCompare3.png
inst/shiny/www/nonSeasonal.png
inst/shiny/www/queryBuilder.png
inst/shiny/www/seasonal.png
inst/shiny/www/trainModel.png
inst/shiny/www/trainParameters.png
inst/shiny/www/valueAnalyzer1.png
inst/shiny/www/valueAnalyzer2.png
inst/unitTests/test_cytof_dimReduction.R
man/ClusterX.Rd
man/DensVM.Rd
man/Rphenograph.Rd
man/cytof_addToFCS.Rd
man/cytof_cluster.Rd
man/cytof_clusterMtrx.Rd
man/cytof_clusterPlot.Rd
man/cytof_clusterStat.Rd
man/cytof_colorPlot.Rd
man/cytof_dimReduction.Rd
man/cytof_exprsExtract.Rd
man/cytof_exprsMerge.Rd
man/cytof_heatmap.Rd
man/cytof_progression.Rd
man/cytof_progressionPlot.Rd
man/cytof_writeResults.Rd
man/cytofkit-package.Rd
man/cytofkit.Rd
man/cytofkitNews.Rd
man/cytofkitShinyAPP.Rd
man/cytofkit_shiny_dashboard.Rd
man/spectral1.Rd
man/spectral2.Rd
run_rstudio.bat
src/.gitignore
src/RcppExports.cpp
src/jaccard_coeff.cpp
tests/runTests.R
vignettes/cluster_panel.png
vignettes/cytofkit_GUI.png
vignettes/cytofkit_example.Rmd
vignettes/cytofkit_pipeline.png
vignettes/cytofkit_shinyAPP.Rmd
vignettes/cytofkit_workflow.Rmd
vignettes/load2shiny.png
vignettes/logo.png
vignettes/marker_panel.png
vignettes/progression_panel.png
vignettes/sample_panel.png
