cytof_clusterMtrx: Expression values by cluster
In raman91/cytofkit2: cytofkit: an integrated mass cytometry data analysis pipeline

Description Usage Arguments Value Examples

Generate a matrix of expression values for cells in a cluster

1	cytof_clusterMtrx(analysis_results, clusterMethod = NULL, cluster)

`analysis_results`	analysis_results output of cytofkit to extract expression values from.
`clusterMethod`	The cluster method of interest. If none is selected, the first one will be used.
`cluster`	The cluster of interest.

A data table with marker expression values of cells in a given cluster

 
dir <- system.file('extdata',package='cytofkit2')
file <- list.files(dir ,pattern='.RData$', full=TRUE)
load(file)
cluster2_table <- cytof_clusterMtrx(analysis_results, "Rphenograph", 2)