Description Usage Arguments Value
Store the new dimension transformed data and cluster data into the exprs 
matrix in new fcs files under analyzedFCSdir
| 1 2 3 4 | 
| data | The new data matrix to be added in. | 
| rawFCSdir | The directory containing the original fcs files. | 
| origSampNames | Vector of original names of samples, if samples were renamed. | 
| analyzedFCSdir | The directory to store the new fcs files. | 
| transformed_cols | The column name of the dimension transformed data in  | 
| cluster_cols | The column name of the cluster data in  | 
| clusterIDs | Table of cell cluster IDs for each clustering method | 
| specifySampleNames | Used only if sample names differ from those in raw fcs. | 
| inLgclTrans | If  | 
New fcs files stored under analyzedFCSdir
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