get_id: Get details about an Ensembl identifier

In ramiromagno/ensemblr: R Client for the Ensembl REST API

Get details about an Ensembl identifier

Description

This function retrieves information about one or more Ensembl identifiers. Ensembl identifiers for which information is available are: genes, exons, transcripts and proteins.

Usage

get_id(id, verbose = FALSE, warnings = TRUE, progress_bar = TRUE)

Arguments

id	A character vector of Ensembl identifiers. Ensembl identifiers have the form ENS[species prefix][feature type prefix][a unique eleven digit number]. id should not contain NAs. Please note that while 'ENSG00000157764' is a valid identifier as a query, 'ENSG00000157764.13' is not.
verbose	Whether to be verbose about the http requests and respective responses' status.
warnings	Whether to show warnings.
progress_bar	Whether to show a progress bar.

Value

A tibble of 9 variables:

id

Ensembl identifier.

id_latest

Ensembl identifier including the version suffix.

type

Entity type: gene ('Gene'), exon ('Exon'), transcript ('Transcript'), and protein ('Translation').

id_version

Ensembl identifier version, indicates how many times that entity has changed during its time in Ensembl.

release

Ensembl release version.

is_current

Is this the latest identifier for the represented entity.

genome_assembly_name

Code name of the genome assembly.

peptide

TODO

possible_replacement

TODO

Examples

get_id(c('ENSDARE00000830915', 'ENSG00000248378', 'ENSDART00000033574', 'ENSP00000000233'))

ramiromagno/ensemblr documentation built on Sept. 5, 2024, 9:22 a.m.