eqtlFinder: eqtlFinder
In raphg/iBMQ: integrated Bayesian Modeling of eQTL data
Description
Usage
Arguments
Value
Examples
Description
We can calculate how many eQTLs have PPA above the cutoff with the eqtlFinder function.
Usage
1
eqtlFinder(prob, threshold)
Arguments
prob
matrix or data frame that contains the Posterior
Probability of Association values (output of eqtlMcmc function)
threshold
Threshold to be used to determine which QTLs are significant. This value can be the output of the calculateThreshold function.It must be a numerical value between 0 and 1.
Value
The output of the eqtlFinder is a data frame where the first column contains the names of each gene, the second column contains the names of corresponding markers and the third column contains the PPA value for each significant eQTL.
Examples
1
2
3
data(PPA.liver)
cutoff.liver <- calculateThreshold(PPA.liver, 0.2)
eqtl.liver <- eqtlFinder(PPA.liver, cutoff.liver)
raphg/iBMQ documentation built on May 26, 2019, 11:06 p.m.
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Description Usage Arguments Value Examples
Description
We can calculate how many eQTLs have PPA above the cutoff with the eqtlFinder function.
Usage
1 | eqtlFinder(prob, threshold)
|
Arguments
prob |
matrix or data frame that contains the Posterior Probability of Association values (output of eqtlMcmc function) |
threshold |
Threshold to be used to determine which QTLs are significant. This value can be the output of the calculateThreshold function.It must be a numerical value between 0 and 1. |
Value
The output of the eqtlFinder is a data frame where the first column contains the names of each gene, the second column contains the names of corresponding markers and the third column contains the PPA value for each significant eQTL.
Examples
1 2 3 | data(PPA.liver)
cutoff.liver <- calculateThreshold(PPA.liver, 0.2)
eqtl.liver <- eqtlFinder(PPA.liver, cutoff.liver)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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