AddXToWeekly | Adds seasonal week to dataset |
bayesian | bayesian |
bayesian_load_stack_schema | Create analysis stack and datasets for a tag |
calculate_completeness | Calculate completeness |
calculate_confidence_interval | Calculate Confidence Interval |
CalculateTrainPredictYearPattern | Determining which years of training data will be used |
CleanData | Format the raw data |
clean_post_analysis | clean_post_analysis |
CONFIG | Variables produced by the daily algorithm |
ConvertConfigForAPI | Convert the new 'CONFIG' for use in the old external API |
create_folders | create_folders |
CreateLatestDoneFile | Create the latest done file |
DeleteLatestDoneFile | Delete the latest done file |
DeleteOldDatasets | Delete old datasets |
DetermineStatus | Normal <= threshold2 threshold2 < Medium <= threshold4... |
EmailNotificationOfNewData | Email notification of new data |
EmailTechnicalNewResults | Internal email notifying about new results |
extract_diagnostics | extracts diangostics data from a regression fit |
FarringtonSEinGammaSpace | Calculate Farrington SE in gamma space |
FarringtonThreshold | Calculate Farrington threshold |
FarringtonZscore | Farrington Z score |
GenerateOutbreakListAPI | Generates the external outbreak list Generates the internal... |
GenerateOutbreakListInternal | GenerateOutbreakListInternal |
GenFakeDataAnalysis | Generate fake data for analysis |
GenFakeDataClean | Generate fake clean data |
GenFakeDataRaw | Generate fake raw data |
GenFakeResultsFull | Generate fake analysis results |
get_mem_limits_schema | get_mem_schema |
get_mem_schema | get_mem_schema |
get_n_doctors | get_n_doctors |
get_schema_qp_diagnostics | get_schema_qp_diagnostics_weekly |
IdentifyAllDatasets | Identify all raw/clean datasets that are available |
IdentifyDatasets | Identify the latest raw/clean datasets |
LatestDatasets | Latest datasets |
latest_date | latest_date |
LatestRawID | test |
load_stack_schema | Create analysis stack and datasets for a tag |
MeM | Mem implementation |
models | Model List |
new_diagnostics_df | new_diagnostics_df |
quasip | quasip |
QuasipoissonTrainPredictData | Quasipoisson Core Algorithm |
reexports | Objects exported from other packages |
run_all_mem | run_all_mem |
SaveRDS | Save data into multiple RDS files |
split_into_equal | split_into_equal |
standard | standard |
sykdomspuls_aggregate | sykdomspuls_aggregate |
UpdateData | Top level function call for cleaning of data |
update_diagnostics | update_diagnostics |
ValidateDataClean | Validate clean data |
ValidateDataRaw | Validate raw data |
ValidateResultsFull | Validate the analysis results |
VARS | Global variables used for defining formats of data structures |
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