Man pages for rbarner/infantMilkConsumption
Create statistical tables and plots used in manuscript "Formula with Added Sugars Significantly Alters Gut Microbiota and Cognitive Development in Hispanic Infants"
| compute_alphaDiversity_milkType_association | Compute association between Alpha-Diversity and milk... |
| compute_bayley_milkType_association | Compute association between Bayley's Infant Scale of... |
| compute_betaDiversity_milkType_association | Compute association between Beta-Diversity and milk... |
| compute_keggModule_milkType_association | Compute association between reads mapping to predicted KEGG... |
| compute_possibleCovariates_milkType_association | Compute p-values for ANOVA testing differences in means of... |
| compute_somaticGrowth_milkType_association | Compute association between growth measures at 24 months of... |
| compute_taxa_milk_association | Compute association between reads mapping to taxanomic groups... |
| plot_alphaDiversity_milkType_association | Create boxplots of alpha diversity and milk consumption type |
| plot_bayley_milkType_association | Create boxplots of child development at 24 months and milk... |
| plot_betaDiversity_milkType_association | Create boxplots of beta diversity and milk consumption type |
| plot_deicode_pca_plots | Generate PCA plot using beta diversities calculated in... |
| plot_family_relativeAbundances_barplot | Generate barplot of taxonomic groups at the family level |
| plot_keggModule_milkType_association | Generate boxplots of reads mapping to predicted KEGG modules... |
| plot_phylum_relativeAbundances_barplot | Generate barplot of taxonomic groups at the phylum level |
| plot_somaticGrowth_milkType_association | Create boxplots of child growth at 24 months by milk... |
| plot_taxa_milkType_association | Create boxplots of specified taxonomic group by milk... |
