plot_taxa_milkType_association: Create boxplots of specified taxonomic group by milk...
In rbarner/infantMilkConsumption: Create statistical tables and plots used in manuscript "Formula with Added Sugars Significantly Alters Gut Microbiota and Cognitive Development in Hispanic Infants"
Description
Usage
Arguments
Author(s)
Examples
View source: R/plot_functions.R
Description
This function will output the a boxplot of means of a specified taxonomic group across milk consumption types at 6-months of age.
Usage
1
plot_taxa_milkType_association(taxaFile = phylumTaxa,variable = "k__Bacteria.p__Actinobacteria",variableName = "Logged Abundance of Actinobacteria")
Arguments
taxaFile
R Data file containing read counts of taxa at specified level with samples as columns and taxonomic groups as rows.
variable
Taxa to be plotted.
variableName
Name of taxa to be plotted. Will be used as the title of the y-axis.
Author(s)
Roshonda B. Jones
Examples
1
2
plot_taxa_milkType_association()
plot_taxa_milkType_association(taxaFile = genusTaxa,variable ="p__Firmicutes.c__Clostridia.o__Clostridiales.f__Lachnospiraceae.g__Blautia",variableName="Logged Abundance of Blautia")
rbarner/infantMilkConsumption documentation built on Nov. 19, 2019, 12:36 a.m.
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Description Usage Arguments Author(s) Examples
View source: R/plot_functions.R
Description
This function will output the a boxplot of means of a specified taxonomic group across milk consumption types at 6-months of age.
Usage
1 | plot_taxa_milkType_association(taxaFile = phylumTaxa,variable = "k__Bacteria.p__Actinobacteria",variableName = "Logged Abundance of Actinobacteria")
|
Arguments
taxaFile |
R Data file containing read counts of taxa at specified level with samples as columns and taxonomic groups as rows. |
variable |
Taxa to be plotted. |
variableName |
Name of taxa to be plotted. Will be used as the title of the y-axis. |
Author(s)
Roshonda B. Jones
Examples
1 2 | plot_taxa_milkType_association()
plot_taxa_milkType_association(taxaFile = genusTaxa,variable ="p__Firmicutes.c__Clostridia.o__Clostridiales.f__Lachnospiraceae.g__Blautia",variableName="Logged Abundance of Blautia")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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