Models for Data from Unmarked Animals

backTransform-methods | Methods for Function backTransform in Package 'unmarked' |

birds | BBS Point Count and Occurrence Data from 2 Bird Species |

coef-methods | Methods for Function coef in Package 'unmarked' |

colext | Fit the dynamic occupancy model of MacKenzie et. al (2003) |

computeMPLElambdas | Compute the penalty weight for the MPLE penalized likelihood... |

confint-methods | Methods for Function confint in Package 'unmarked' |

crossbill | Detection/non-detection data on the European crossbill... |

crossVal | Cross-validation methods for fitted unmarked models and fit... |

cruz | Landscape data for Santa Cruz Island |

csvToUMF | Convert .CSV File to an unmarkedFrame |

detFuns | Distance-sampling detection functions and associated density... |

distsamp | Fit the hierarchical distance sampling model of Royle et al.... |

distsampOpen | Open population model for distance sampling data |

extract-methods | Methods for bracket extraction [ in Package 'unmarked' |

fitList | constructor of unmarkedFitList objects |

fitted-methods | Methods for Function fitted in Package 'unmarked' |

formatDistData | Bin distance data |

formatMult | Create unmarkedMultFrame from Long Format Data Frame |

formatWideLong | Convert between wide and long data formats. |

frogs | 2001 Delaware North American Amphibian Monitoring Program... |

gdistsamp | Fit the generalized distance sampling model of Chandler et... |

getB-methods | Methods for Function getB in Package 'unmarked' |

getFP-methods | Methods for Function getFP in Package 'unmarked' |

getP-methods | Methods for Function getP in Package 'unmarked' |

gf | Green frog count index data |

gmultmix | Generalized multinomial N-mixture model |

gpcount | Generalized binomial N-mixture model for repeated count data |

imputeMissing | A function to impute missing entries in continuous obsCovs |

issj | Distance-sampling data for the Island Scrub Jay (_Aphelocoma... |

jay | European Jay data from the Swiss Breeding Bird Survey 2002 |

lambda2psi | Convert Poisson mean (lambda) to probability of occurrence... |

linearComb-methods | Methods for Function linearComb in Package 'unmarked' |

linetran | Simulated line transect data |

makePiFuns | Create functions to compute multinomial cell probabilities |

mallard | Mallard count data |

masspcru | Massachusetts North American Amphibian Monitoring Program... |

modSel | Model selection results from an unmarkedFitList |

multinomPois | Multinomial-Poisson Mixtures Model |

multmixOpen | Open population multinomial N-mixture model |

nonparboot-methods | Nonparametric bootstrapping in unmarked |

occu | Fit the MacKenzie et al. (2002) Occupancy Model |

occuFP | Fit occupancy models when false positive detections occur... |

occuMS | Fit Single-Season and Dynamic Multi-State Occupancy Models |

occuMulti | Fit the Rota et al. (2016) Multi-species Occupancy Model |

occuPEN | Fit the MacKenzie et al. (2002) Occupancy Model with the... |

occuPEN_CV | Fit the MacKenzie et al. (2002) Occupancy Model with the... |

occuRN | Fit the occupancy model of Royle and Nichols (2003) |

occuTTD | Fit Single-Season and Dynamic Time-to-detection Occupancy... |

ovendata | Removal data for the Ovenbird |

parboot | Parametric bootstrap method for fitted models inheriting... |

pcount | Fit the N-mixture model of Royle (2004) |

pcountOpen | Fit the open N-mixture models of Dail and Madsen and... |

pcount.spHDS | Fit spatial hierarchical distance sampling model. |

piFuns | Compute multinomial cell probabilities |

pointtran | Simulated point-transect data |

posteriorSamples | Draw samples from the posterior predictive distribution |

predict-methods | Methods for Function predict in Package 'unmarked' |

ranef-methods | Methods for Function 'ranef' in Package 'unmarked' |

SE-methods | Methods for Function SE in Package 'unmarked' |

sight2perpdist | Convert sight distance and sight angle to perpendicular... |

simulate-methods | Methods for Function simulate in Package 'unmarked' |

SSE | Compute Sum of Squared Residuals for a Model Fit. |

Switzerland | Swiss landscape data |

unmarkedEstimate-class | Class "unmarkedEstimate" |

unmarkedEstimateList-class | Class "unmarkedEstimateList" |

unmarkedFit-class | Class "unmarkedFit" |

unmarkedFitList-class | Class "unmarkedFitList" |

unmarkedFrame | Create an unmarkedFrame, or one of its child classes. |

unmarkedFrame-class | Class "unmarkedFrame" |

unmarkedFrameDS | Organize data for the distance sampling model of Royle et al.... |

unmarkedFrameDSO | Create an object of class unmarkedFrameDSO that contains data... |

unmarkedFrameMMO | Create an object of class unmarkedFrameMMO that contains data... |

unmarkedFrameMPois | Organize data for the multinomial-Poisson mixture model of... |

unmarkedFrameOccu | Organize data for the single season occupancy models fit by... |

unmarkedFrameOccuFP | Organize data for the single season occupancy models fit by... |

unmarkedFrameOccuMS | Organize data for the multi-state occupancy model fit by... |

unmarkedFrameOccuMulti | Organize data for the multispecies occupancy model fit by... |

unmarkedFrameOccuTTD | Create an unmarkedFrameOccuTTD object for the... |

unmarkedFramePCO | Create an object of class unmarkedFramePCO that contains data... |

unmarkedFramePCount | Organize data for the N-mixture model fit by pcount |

unmarkedMultFrame | Create an unmarkedMultFrame, unmarkedFrameGMM,... |

unmarked-package | Models for Data from Unmarked Animals |

unmarkedRanef-class | Class '"unmarkedRanef"' |

vcov-methods | Methods for Function vcov in Package 'unmarked' |

vif | Compute Variance Inflation Factors for an unmarkedFit Object. |

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