Files in rbchan/unmarked
Models for Data from Unmarked Animals

.Rbuildignore
.gitattributes
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/build-mac-binary.yaml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md R/IDS.R R/RcppExports.R R/boot.R R/classes.R R/colext.R R/distsamp.R R/distsampOpen.R R/gdistremoval.R R/gdistsamp.R R/getDesign.R R/gmultmix.R R/goccu.R R/gpcount.R R/makePiFun.R R/mapInfo.R R/mixedModelTools.R R/multinomPois.R R/multmixOpen.R R/nmixTTD.R R/occu.R R/occuCOP.R R/occuFP.R R/occuMS.R R/occuMulti.R R/occuPEN.R R/occuRN.R R/occuTTD.R R/pcount.R R/pcount.spHDS.R R/pcountOpen.R R/piFun.R R/plotEffects.R R/posteriorSamples.R R/power.R R/predict.R R/ranef.R R/simulate.R R/unmarkedCrossVal.R R/unmarkedEstimate.R R/unmarkedFit.R R/unmarkedFitList.R R/unmarkedFrame.R R/unmarkedLinComb.R R/utils.R R/vif.R R/zzz.R README.Rmd README.md
_pkgdown.yml
data/MesoCarnivores.rda
data/Switzerland.RData
data/birds.RData
data/crossbill.rda
data/cruz.rda
data/frogs.RData
data/gf.RData
data/issj.rda
data/jay.rda
data/linetran.RData
data/mallard.RData
data/masspcru.RData
data/ovendata.RData
data/pointtran.RData
inst/CITATION
inst/bench/bench.occu.R inst/bench/bench.pcount.R inst/bench/bench.pcountOpen.R
inst/csv/alfl.capRecap.csv
inst/csv/alfl.csv
inst/csv/alflCovs.csv
inst/csv/csv_factor_test.csv
inst/csv/distdata.csv
inst/csv/frog2001pcru.csv
inst/csv/frog2001pfer.csv
inst/csv/widewt.csv
inst/shinyPower/server.R inst/shinyPower/ui.R man/IDS.Rd man/MesoCarnivores.Rd man/SE-methods.Rd man/SSE.Rd man/Switzerland.Rd man/backTransform-methods.rd man/birds.Rd man/coef-methods.Rd man/colext.Rd man/computeMPLElambdas.Rd man/confint-methods.Rd man/crossVal.Rd man/crossbill.Rd man/cruz.Rd man/csvToUMF.Rd man/detFuns.Rd man/distsamp.Rd man/distsampOpen.Rd man/extract-methods.Rd man/fitList.Rd man/fitted-methods.Rd man/formatDistData.Rd man/formatMult.Rd man/formatWideLong.Rd man/frogs.Rd man/gdistremoval.Rd man/gdistsamp.Rd man/getB-methods.Rd man/getFP-methods.Rd man/getP-methods.Rd man/gf.Rd man/gmultmix.Rd man/goccu.Rd man/gpcount.Rd man/imputeMissing.Rd man/issj.Rd man/jay.Rd man/lambda2psi.Rd man/linearComb-methods.Rd man/linetran.Rd man/makePiFuns.Rd man/mallard.Rd man/masspcru.Rd man/modSel.Rd man/multinomPois.Rd man/multmixOpen.Rd man/nmixTTD.Rd man/nonparboot-methods.Rd man/occu.Rd man/occuCOP.Rd man/occuFP.Rd man/occuMS.Rd man/occuMulti.Rd man/occuPEN.Rd man/occuPEN_CV.Rd man/occuRN.Rd man/occuTTD.Rd man/optimizePenalty-methods.Rd man/ovendata.Rd man/parboot.Rd man/pcount.Rd man/pcount.spHDS.Rd man/pcountOpen.Rd man/piFuns.Rd man/plotEffects.Rd man/pointtran.Rd man/posteriorSamples.Rd man/powerAnalysis.Rd man/predict-methods.Rd man/randomTerms.Rd man/ranef-methods.Rd man/shinyPower.Rd man/sight2perpdist.Rd man/sigma.Rd man/simulate-methods.Rd man/unmarked-package.Rd man/unmarkedEstimate-class.Rd man/unmarkedEstimateList-class.Rd man/unmarkedFit-class.Rd man/unmarkedFitList-class.rd man/unmarkedFrame-class.Rd man/unmarkedFrame.Rd man/unmarkedFrameDS.Rd man/unmarkedFrameDSO.Rd man/unmarkedFrameGDR.Rd man/unmarkedFrameMMO.Rd man/unmarkedFrameMPois.Rd man/unmarkedFrameOccu.Rd man/unmarkedFrameOccuCOP.Rd man/unmarkedFrameOccuFP.Rd man/unmarkedFrameOccuMS.Rd man/unmarkedFrameOccuMulti.Rd man/unmarkedFrameOccuTTD.Rd man/unmarkedFramePCO.Rd man/unmarkedFramePCount.Rd man/unmarkedMultFrame.Rd man/unmarkedPower-class.Rd man/unmarkedPowerList.Rd man/unmarkedRanef-class.Rd man/vcov-methods.Rd man/vif.Rd
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/TMB/compile.R
src/TMB/tmb_IDS.hpp
src/TMB/tmb_distsamp.hpp
src/TMB/tmb_gdistremoval.hpp
src/TMB/tmb_goccu.hpp
src/TMB/tmb_keyfun.hpp
src/TMB/tmb_multinomPois.hpp
src/TMB/tmb_occu.hpp
src/TMB/tmb_pcount.hpp
src/TMB/tmb_pifun.hpp
src/TMB/tmb_utils.hpp
src/TMB/unmarked_TMBExports.cpp
src/detfuns.cpp
src/detfuns.h
src/distprob.cpp
src/distprob.h
src/distr.cpp
src/distr.h
src/get_lik_trans.cpp
src/get_mlogit.cpp
src/hmm.c
src/nll_distsamp.cpp
src/nll_distsampOpen.cpp
src/nll_gdistremoval.cpp
src/nll_gdistsamp.cpp
src/nll_gmultmix.cpp
src/nll_gpcount.cpp
src/nll_multinomPois.cpp
src/nll_multmixOpen.cpp
src/nll_nmixTTD.cpp
src/nll_occu.cpp
src/nll_occuCOP.cpp
src/nll_occuMS.cpp
src/nll_occuMulti.cpp
src/nll_occuPEN.cpp
src/nll_occuRN.cpp
src/nll_occuTTD.cpp
src/nll_pcount.cpp
src/nll_pcountOpen.cpp
src/pifun.cpp
src/pifun.h
src/tranprobs.cpp
src/tranprobs.h
src/utils.cpp
src/utils.h
tests/testthat.R tests/testthat/test_IDS.R tests/testthat/test_colext.R tests/testthat/test_crossVal.R tests/testthat/test_distsamp.R tests/testthat/test_distsampOpen.R tests/testthat/test_fitList.R tests/testthat/test_formatInputs.R tests/testthat/test_gdistremoval.R tests/testthat/test_gdistsamp.R tests/testthat/test_gmultmix.R tests/testthat/test_goccu.R tests/testthat/test_gpcount.R tests/testthat/test_linearComb.R tests/testthat/test_makePiFun.R tests/testthat/test_modSel.R tests/testthat/test_multinomPois.R tests/testthat/test_multmixOpen.R tests/testthat/test_nmixTTD.R tests/testthat/test_nonparboot.R tests/testthat/test_occu.R tests/testthat/test_occuCOP.R tests/testthat/test_occuFP.R tests/testthat/test_occuMS.R tests/testthat/test_occuMulti.R tests/testthat/test_occuPEN.R tests/testthat/test_occuRN.R tests/testthat/test_occuTTD.R tests/testthat/test_parboot.R tests/testthat/test_pcount.R tests/testthat/test_pcount.spHDS.R tests/testthat/test_pcountOpen.R tests/testthat/test_plotEffects.R tests/testthat/test_powerAnalysis.R tests/testthat/test_predict.R tests/testthat/test_ranef_predict.R tests/testthat/test_simulate.R tests/testthat/test_unmarkedFrame.R tests/testthat/test_utils.R tests/testthat/test_vif.R
vignettes/README.txt
vignettes/cap-recap.Rmd
vignettes/colext-data-1.png
vignettes/colext-est-1.png
vignettes/colext-gof-1.png
vignettes/colext-pred-1.png
vignettes/colext.Rmd
vignettes/colext.Rmd.orig
vignettes/contributing_to_unmarked.Rmd vignettes/distsamp.Rmd
vignettes/ecology.csl
vignettes/figures/COP-model.png
vignettes/figures/poweranalysis-acfl-1.png
vignettes/figures/poweranalysis-acfl-2.png
vignettes/figures/poweranalysis-alpha.png
vignettes/figures/poweranalysis-effectsizes.png
vignettes/figures/poweranalysis-list-1.png
vignettes/figures/poweranalysis-modinfo.png
vignettes/figures/poweranalysis-nulls.png
vignettes/figures/poweranalysis-run.png
vignettes/figures/poweranalysis-scenarios.png
vignettes/figures/poweranalysis-summaryplot.png
vignettes/figures/poweranalysis-summarytable.png
vignettes/occuMulti.Rmd vignettes/powerAnalysis.Rmd
vignettes/powerAnalysis.Rmd.orig
vignettes/simulate.Rmd vignettes/spp-dist.Rmd vignettes/unmarked.Rmd
vignettes/unmarked.bib
rbchan/unmarked documentation built on March 4, 2024, 9:01 p.m.