NEWS.md

In rcannood/PRISM: Running Commands Remotely on 'Gridengine' Clusters

qsub 1.1.3

• BUG FIX: Fix compress parameter such that it should contain only one value at a time.

qsub 1.1.2

• BUG FIX: Copy paste the relevant code from tools::R_user_dir() into config_file_location() to ensure that qsub works with older versions of R.

• TESTING: Skip test on CRAN which might result in the creation of the cache dir as specified by R_user_dir if it did not already exist.

qsub 1.1.1

• BUG FIX: Surround readRDS() with tryCatch() such that if there is an rds object but it is truncated, qsub handles this as if there was no file at all.

• MINOR CHANGE: config_file_location() now uses tools::R_user_dir() to determine the path of the config file.

qsub 1.1.0 (13-02-2019)

• MINOR CHANGE: There is now an option to compress the output files, which is turned on by default.

• MINOR CHANGE: Allow unix systems to use rsync instead of cp for fetching the qsub output.

• BUG FIX: Fix qsub_retrieve() when processing the output; it did not take into account that batch_tasks could not be equal to 1.

• MINOR CHANGE: qsub_retrieve() now uses pbapply when loading in the output.

• BUG FIX: Test ssh connection pointer before using it.

• BUG FIX: Do not remove the first line of an error file.

• MINOR CHANGE: Use absolute paths to output standard output and error logs (#16, suggested by @mmehan).

• MINOR CHANGE; Allow rsync to also use the username@host:port notation (#16, suggested by @mmehan).

qsub 1.0.0 (30-07-2018)

• INITIAL RELEASE: qsub allows you to run lapply() calls in parallel by submitting them to gridengine clusters using the qsub command.

rcannood/PRISM documentation built on Sept. 24, 2021, 11:10 p.m.