Files in rcannood/SCORPIUS
Inferring Developmental Chronologies from Single-Cell RNA Sequencing Data
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/data.R
R/dimensionality_reduction.R
R/dummy_proofing.R
R/dynwrap_integration.R
R/extract_modules.R
R/gene_importances.R
R/package.R
R/plotting.R
R/scaling.R
R/trajectory_inference.R
README.Rmd
README.md
SCORPIUS.Rproj
_pkgdown.yml
codecov.yml
cran-comments.md
data-raw/ginhoux.R
data-raw/ginhoux_orig.rds
data/ginhoux.rda
inst/CITATION
inst/dynwrap/definition.yml
inst/dynwrap/example.sh
inst/dynwrap/run.R
library.bib
man/SCORPIUS-package.Rd
man/draw_trajectory_heatmap.Rd
man/draw_trajectory_plot.Rd
man/extract_modules.Rd
man/figures/README_infer_trajectory-1.png
man/figures/README_moduled_tafs-1.png
man/figures/README_reduce_dimensionality-1.png
man/figures/README_visualise_tafs-1.png
man/gene_importances.Rd
man/generate_dataset.Rd
man/ginhoux.Rd
man/infer_initial_trajectory.Rd
man/infer_trajectory.Rd
man/reduce_dimensionality.Rd
man/reexports.Rd
man/reverse_trajectory.Rd
man/ti_scorpius.Rd
tests/testthat.R
tests/testthat/test-data.R
tests/testthat/test-dimensionality_reduction.R
tests/testthat/test-extract_modules.R
tests/testthat/test-gene_importances.R
tests/testthat/test-scaling.R
tests/testthat/test-sparse.R
tests/testthat/test-trajectory_inference.R
vignettes/anndata.Rmd
vignettes/ginhoux.Rmd
vignettes/seurat.Rmd
vignettes/simulated-data.Rmd
vignettes/singlecellexperiment.Rmd
