Files in rcannood/SCORPIUS
Inferring Developmental Chronologies from Single-Cell RNA Sequencing Data

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS.md R/data.R R/dimensionality_reduction.R R/dummy_proofing.R R/dynwrap_integration.R R/extract_modules.R R/gene_importances.R R/package.R R/plotting.R R/scaling.R R/trajectory_inference.R README.Rmd README.md
SCORPIUS.Rproj
appveyor.yml
cran-comments.md data-raw/ginhoux.R
data-raw/ginhoux_orig.rds
data/ginhoux.rda
inst/CITATION
inst/dynwrap/definition.yml
inst/dynwrap/example.sh
inst/dynwrap/run.R
library.bib
man/SCORPIUS-package.Rd man/draw_trajectory_heatmap.Rd man/draw_trajectory_plot.Rd man/extract_modules.Rd
man/figures/README_infer_trajectory-1.png
man/figures/README_moduled_tafs-1.png
man/figures/README_reduce_dimensionality-1.png
man/figures/README_visualise_tafs-1.png
man/gene_importances.Rd man/generate_dataset.Rd man/ginhoux.Rd man/infer_initial_trajectory.Rd man/infer_trajectory.Rd man/reduce_dimensionality.Rd man/reexports.Rd man/reverse_trajectory.Rd man/ti_scorpius.Rd man/ti_scorpius_run_fun.Rd tests/testthat.R tests/testthat/test-data.R tests/testthat/test-dimensionality_reduction.R tests/testthat/test-extract_modules.R tests/testthat/test-gene_importances.R tests/testthat/test-scaling.R tests/testthat/test-sparse.R tests/testthat/test-trajectory_inference.R vignettes/ginhoux.Rmd
vignettes/ginhoux.html
vignettes/ginhoux.md
vignettes/ginhoux_files/figure-gfm/moduled_tafs-1.png
vignettes/ginhoux_files/figure-gfm/plot_trajectory-1.png
vignettes/ginhoux_files/figure-gfm/show_dimred-1.png
vignettes/ginhoux_files/figure-gfm/visualise_tafs-1.png
vignettes/ginhoux_files/figure-markdown_github/moduled_tafs-1.png
vignettes/ginhoux_files/figure-markdown_github/plot_trajectory-1.png
vignettes/ginhoux_files/figure-markdown_github/show_dimred-1.png
vignettes/ginhoux_files/figure-markdown_github/visualise_tafs-1.png
vignettes/seurat.Rmd
vignettes/seurat.html
vignettes/seurat.html.asis
vignettes/seurat.md
vignettes/seurat_files/figure-gfm/moduled_tafs-1.png
vignettes/seurat_files/figure-gfm/plot_trajectory-1.png
vignettes/seurat_files/figure-gfm/show_dimred-1.png
vignettes/seurat_files/figure-gfm/visualise_tafs-1.png
vignettes/simulated-data.Rmd
vignettes/simulated-data.html
vignettes/simulated-data.md
vignettes/simulated-data_files/figure-gfm/moduled_tafs-1.png
vignettes/simulated-data_files/figure-gfm/plot_trajectory-1.png
vignettes/simulated-data_files/figure-gfm/show_dimred-1.png
vignettes/simulated-data_files/figure-gfm/visualise_tafs-1.png
vignettes/simulated-data_files/figure-markdown_github/moduled_tafs-1.png
vignettes/simulated-data_files/figure-markdown_github/plot_trajectory-1.png
vignettes/simulated-data_files/figure-markdown_github/show_dimred-1.png
vignettes/simulated-data_files/figure-markdown_github/visualise_tafs-1.png
rcannood/SCORPIUS documentation built on May 11, 2020, 4:05 p.m.