Files in rcannood/SCORPIUS
Inferring Developmental Chronologies from Single-Cell RNA Sequencing Data

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/RcppExports.R R/SCORPIUS.R R/data.R R/deprecated.R R/dimensionality_reduction.R R/dimensionality_reduction_landmarked.R R/distance_functions.R R/evaluation.R R/extract_modules.R R/gene_importances.R R/knn.R R/outliers.R R/plotting.R R/scaling.R R/trajectory_inference.R README.Rmd README.md
README_files/figure-markdown_github/find tafs-1.png
README_files/figure-markdown_github/infer trajectory-1.png
README_files/figure-markdown_github/moduled tafs-1.png
README_files/figure-markdown_github/reduce dimensionality-1.png
README_files/figure-markdown_github/visualise tafs-1.png
SCORPIUS.Rproj
data/ginhoux.rda
data/ginhoux_orig.rds
library.bib
man/SCORPIUS-deprecated.Rd man/SCORPIUS.Rd man/apply_quantile_scale.Rd man/apply_uniform_scale.Rd man/correlation_distance.Rd man/draw_trajectory_heatmap.Rd man/draw_trajectory_plot.Rd man/euclidean_distance.Rd man/evaluate_dim_red.Rd man/evaluate_trajectory.Rd man/extract_modules.Rd man/gene_importances.Rd man/generate_dataset.Rd man/ginhoux.Rd man/infer_initial_trajectory.Rd man/infer_trajectory.Rd man/knn.Rd man/knn_distances.Rd man/outlier_filter.Rd man/outlierness.Rd man/reduce_dimensionality.Rd man/reduce_dimensionality_landmarked.Rd man/reverse_trajectory.Rd man/scale_quantile.Rd man/scale_uniform.Rd
src/RcppExports.cpp
src/distance_functions.cpp
tests/testthat.R tests/testthat/test-data.R tests/testthat/test-dimensionality_reduction.R tests/testthat/test-dimensionality_reduction_landmarked.R tests/testthat/test-distance_functions.R tests/testthat/test-evaluation.R tests/testthat/test-extract_modules.R tests/testthat/test-gene_importances.R tests/testthat/test-knn.R tests/testthat/test-outliers.R tests/testthat/test-scaling.R tests/testthat/test-trajectory_inference.R vignettes/ginhoux.R vignettes/ginhoux.Rmd
vignettes/ginhoux.html
vignettes/ginhoux.md
vignettes/ginhoux_files/figure-markdown_github/moduled tafs-1.png
vignettes/ginhoux_files/figure-markdown_github/unnamed-chunk-10-1.png
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vignettes/ginhoux_files/figure-markdown_github/unnamed-chunk-9-1.png
vignettes/ginhoux_files/figure-markdown_github/visualise tafs-1.png
vignettes/simulated-data.R vignettes/simulated-data.Rmd
vignettes/simulated-data.html
vignettes/simulated-data.md
vignettes/simulated-data_files/figure-markdown_github/moduled tafs-1.png
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vignettes/simulated-data_files/figure-markdown_github/unnamed-chunk-6-1.png
vignettes/simulated-data_files/figure-markdown_github/unnamed-chunk-8-1.png
vignettes/simulated-data_files/figure-markdown_github/unnamed-chunk-9-1.png
vignettes/simulated-data_files/figure-markdown_github/visualise tafs-1.png
rcannood/SCORPIUS documentation built on April 14, 2018, 8:16 a.m.