infer_initial_trajectory: Infer an initial trajectory through space
In rcannood/SCORPIUS: Inferring Developmental Chronologies from Single-Cell RNA Sequencing Data
View source: R/trajectory_inference.R
infer_initial_trajectory R Documentation
Infer an initial trajectory through space
Description
infer_initial_trajectory infers an initial trajectory for
infer_trajectory by clustering the points and calculating
the shortest path through cluster centers. The shortest path takes into account
the euclidean distance between cluster centers, and the density between those two
points.
Usage
infer_initial_trajectory(space, k)
Arguments
space
A numeric matrix or a data frame containing the coordinates of samples.
k
The number of clusters
Value
the initial trajectory obtained by this method
rcannood/SCORPIUS documentation built on July 30, 2023, 11:08 p.m.
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View source: R/trajectory_inference.R
| infer_initial_trajectory | R Documentation |
Infer an initial trajectory through space
Description
infer_initial_trajectory infers an initial trajectory for
infer_trajectory by clustering the points and calculating
the shortest path through cluster centers. The shortest path takes into account
the euclidean distance between cluster centers, and the density between those two
points.
Usage
infer_initial_trajectory(space, k)
Arguments
space |
A numeric matrix or a data frame containing the coordinates of samples. |
k |
The number of clusters |
Value
the initial trajectory obtained by this method
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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