scan1var: Mean-Variance genome scan with a single-QTL model

Description Usage Arguments Value

Description

Mean-Variance genome scan with a single-QTL model

Usage

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scan1var(pheno_name, mean_covar_names = "1", var_covar_names = "1",
  alleleprobs, non_genetic_data, model = c("normal", "binary"),
  num_cores = 1, ...)

Arguments

pheno_name

name of the phenotype to scan

mean_covar_names

names of the mean covariates

var_covar_names

names of the variance covariates

alleleprobs

Genotype probabilities as calculated by [qtl::calc_genoprob()].

non_genetic_data

phenotype and covararite data.frame

model

Indicates whether to use a normal model (least squares) or binary model (logistic regression) for the phenotype. If ‘model=’binary'', the phenotypes must have values in [0, 1]. individuals. As with the other inputs, it must have 'names' for individual identifiers.

num_cores

Number of CPU cores to use, for parallel calculations. (If '0', use [parallel::detectCores() - 1].)

...

additional optional arguments

Value

results of the scan


rcorty/vqtl2 documentation built on May 8, 2019, 8:11 a.m.