get.mutect2.data: Get MuTect2 Data
In rdeborja/ShlienLab.Core.SSM: Simple Somatic Mutation (SSM) library.
Description
Usage
Arguments
Value
Author(s)
Description
A function that imports all the MuTect2 annotated text files and returns a full dataframe
containing all the merged data.
Usage
1
get.mutect2.data(path = ".", pattern = "hg19_multianno.txt$")
Arguments
path
Path containing the MuTect2 output text files [required]
pattern
The filename pattern to search [default: hg19_multianno.txt$]
Value
Returns a dataframe containing all the variant data from MuTect2 and ANNOVAR.
Author(s)
Richard J. de Borja <richard.deborja@sickkids.ca>
rdeborja/ShlienLab.Core.SSM documentation built on May 20, 2019, 5:27 p.m.
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Description Usage Arguments Value Author(s)
Description
A function that imports all the MuTect2 annotated text files and returns a full dataframe containing all the merged data.
Usage
1 | get.mutect2.data(path = ".", pattern = "hg19_multianno.txt$")
|
Arguments
path |
Path containing the MuTect2 output text files [required] |
pattern |
The filename pattern to search [default: hg19_multianno.txt$] |
Value
Returns a dataframe containing all the variant data from MuTect2 and ANNOVAR.
Author(s)
Richard J. de Borja <richard.deborja@sickkids.ca>
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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