filter_indel: Filter somatic indels.

Description Usage Arguments Author(s)

Description

Apply the standard set of indel filters on a dataframe generated by the ShlienLab SSM pipeline.

Usage

1
filter_indel(data = NULL, source = "WXS", coverage = TRUE, indels = c("ins", "del"))

Arguments

data

R dataframe from the ShlienLab SSM pipeline (required).

source

Type of library sequenced (default: WXS – Must be one of WGS, WXS, CPANEL).

coverage

Filter based on coverage criteria from library type defined in source (default: TRUE).

indels

Vector containing labels for indels (default: c('ins', 'del')).

Author(s)

Richard J. de Borja


rdeborja/ShlienLab.Core.SSM documentation built on May 20, 2019, 5:27 p.m.