filter_indel: Filter somatic indels.
In rdeborja/ShlienLab.Core.SSM: Simple Somatic Mutation (SSM) library.
Description
Usage
Arguments
Author(s)
Description
Apply the standard set of indel filters on a dataframe generated by the ShlienLab SSM pipeline.
Usage
1
Arguments
data
R dataframe from the ShlienLab SSM pipeline (required).
source
Type of library sequenced (default: WXS – Must be one of WGS, WXS, CPANEL).
coverage
Filter based on coverage criteria from library type defined in source (default: TRUE).
indels
Vector containing labels for indels (default: c('ins', 'del')).
Author(s)
Richard J. de Borja
rdeborja/ShlienLab.Core.SSM documentation built on May 20, 2019, 5:27 p.m.
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Description Usage Arguments Author(s)
Description
Apply the standard set of indel filters on a dataframe generated by the ShlienLab SSM pipeline.
Usage
1 |
Arguments
data |
R dataframe from the ShlienLab SSM pipeline (required). |
source |
Type of library sequenced (default: WXS – Must be one of WGS, WXS, CPANEL). |
coverage |
Filter based on coverage criteria from library type defined in source (default: TRUE). |
indels |
Vector containing labels for indels (default: c('ins', 'del')). |
Author(s)
Richard J. de Borja
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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