plot_snp_heatmap: Create the SNP heatmap

In rdeborja/ncov.tools.r: ncov.tools.r

Description

A function to create the SNP heatmap for the nCoV samples used in conjunction with the phylogenetic tree.

Usage

plot_snp_heatmap(alleles = NULL, tip.order = NULL, nucleotides = c("A", "C", "G", "T", "N"), colors = c("blue", "red", "green3", "purple3", "lightgrey"))

Arguments

alleles	A dataframe containing samples analyzed and the alternate alleles along with their position along the genome.
tip.order	A vector containing the order of the samples according to the phylogenetic tree
nucleotides	A vector containing the bases and their order (default: c("A", "C", "G", "T", "N"))
colors	A vector of colors corresponding to the nucleotide labels (default: c("blue", "red", "green3", "purple3", "lightgrey"))

rdeborja/ncov.tools.r documentation built on May 17, 2020, 5:31 p.m.