initializeMutationTypeNuc: SLiM method initializeMutationTypeNuc
In rdinnager/slimrlang: Write SLiM Population Genetics Simulation Scripts in R

Description Usage Arguments Details Value Copyright Author(s)

Documentation for SLiM function initializeMutationTypeNuc, which is a method of the SLiM class Initialize. Note that the R function is a stub, it does not do anything in R (except bring up this documentation). It will only do anything useful when used inside a slim_block function further nested in a slim_script function call, where it will be translated into valid SLiM code as part of a full SLiM script.

1	initializeMutationTypeNuc(id, dominanceCoeff, distributionType, ...)

`id`	An object of type integer or string. Must be of length 1 (a singleton). See details for description.
`dominanceCoeff`	An object of type numeric. Must be of length 1 (a singleton). See details for description.
`distributionType`	An object of type string. Must be of length 1 (a singleton). See details for description.
`...`	An object of type NA. NA See details for description.

Add a nucleotide-based mutation type at initialization time. This function is identical to initializeMutationType() except that the new mutation type will be nucleotide-based – in other words, mutations belonging to the new mutation type will have an associated nucleotide. This function may be called only in nucleotide-based models (as enabled by the nucleotideBased parameter to initializeSLiMOptions()). Nucleotide-based mutations always use a mutationStackGroup of -1 and a mutationStackPolicy of "l". This ensures that a new nucleotide mutation always replaces any previously existing nucleotide mutation at a given position, regardless of the mutation types of the nucleotide mutations. These values are set automatically by initializeMutationTypeNuc(), and may not be changed. See the documentation for initializeMutationType() for all other discussion.

An object of type MutationType object. Return will be of length 1 (a singleton)

This is documentation for a function in the SLiM software, and has been reproduced from the official manual, which can be found here: http://benhaller.com/slim/SLiM_Manual.pdf. This documentation is Copyright © 2016–2020 Philipp Messer. All rights reserved. More information about SLiM can be found on the official website: https://messerlab.org/slim/

Benjamin C Haller (bhaller@benhaller.com) and Philipp W Messer (messer@cornell.edu)

rdinnager/slimrlang documentation built on June 20, 2020, 8:17 p.m.