limma_logFC_to_signed_foldchange: Convert limma's logFC value to signed fold-change
In rdocking/amlpmpsupport: Support Functions for AML PMP RNA-Seq Stratification Manuscript
Description
Usage
Arguments
Value
View source: R/run_voom_for_feature.r
Description
Note that this needs to convert negative logFC numbers to absolute values to get correct fold-change estimates.
limma reports ‘logFC' as the ’estimate of the log2-fold-change'. For fold-changes in the negative direction
we need to use the absolute value of the fold-change before applying the sign
Usage
1
Arguments
logFC
A logFC value reported by limma
Value
foldchange A signed fold-change value
rdocking/amlpmpsupport documentation built on Jan. 4, 2021, 7:09 a.m.
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Description Usage Arguments Value
View source: R/run_voom_for_feature.r
Description
Note that this needs to convert negative logFC numbers to absolute values to get correct fold-change estimates. limma reports ‘logFC' as the ’estimate of the log2-fold-change'. For fold-changes in the negative direction we need to use the absolute value of the fold-change before applying the sign
Usage
1 |
Arguments
logFC |
A logFC value reported by limma |
Value
foldchange A signed fold-change value
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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