Files in reconhub/outbreaker2
Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data

.Rbuildignore
.gitignore
.travis.yml
CONDUCT.md
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md R/RcppExports.R R/bind_moves.R R/bind_to_function.R R/create_config.R R/create_param.R R/custom_likelihoods.R R/custom_moves.R R/custom_priors.R R/doc_data.R R/get_cpp_api.R R/internals.R R/outbreaker.R R/outbreaker_chains_methods.R R/outbreaker_data.R R/outbreaker_find_imports.R R/outbreaker_init_mcmc.R R/outbreaker_mcmc_shape.R R/outbreaker_mcmc_store.R R/outbreaker_move.R R/package.R R/palettes.R R/ref_likelihoods.R R/ref_priors.R R/sim_ctd.R R/zzz.R README.Rmd README.md
appveyor.yml
data/fake_outbreak.RData
docs/404.html
docs/CONDUCT.html
docs/LICENSE-text.html
docs/articles/Rcpp_API.html
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inst/CITATION
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man/bind_to_function.Rd man/create_config.Rd man/create_param.Rd man/custom_likelihoods.Rd man/custom_moves.Rd man/custom_priors.Rd man/fake_outbreak.Rd man/get_cpp_api.Rd man/outbreaker.Rd man/outbreaker_chains.Rd man/outbreaker_data.Rd man/outbreaker_package.Rd man/palettes.Rd man/sim_ctd.Rd
outbreaker2.Rproj
src/RcppExports.cpp
src/internals.cpp
src/internals.h
src/likelihoods.cpp
src/likelihoods.h
src/moves.cpp
src/moves.h
src/priors.cpp
src/priors.h
tests/testthat.R tests/testthat/test_binding.R tests/testthat/test_config.R tests/testthat/test_data.R tests/testthat/test_find_imports.R tests/testthat/test_likelihoods.R tests/testthat/test_moves.R tests/testthat/test_non_exported.R tests/testthat/test_outbreaker.R tests/testthat/test_priors.R tests/testthat/test_sim_ctd.R vignettes/Rcpp_API.Rmd vignettes/customisation.Rmd
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vignettes/figs-customisation/res_null_diag-1.png
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vignettes/figs-customisation/traces_custom_priors-5.png
vignettes/figs-customisation/wt_net-1.png
vignettes/figs-introduction/basic_trace-1.png
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vignettes/introduction.Rmd vignettes/overview.Rmd
reconhub/outbreaker2 documentation built on July 3, 2019, 7:55 a.m.