fake_outbreak: Small simulated outbreak
In reconhub/outbreaker2: Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data
fake_outbreak R Documentation
Small simulated outbreak
Description
This dataset is a small (30 cases) simulated outbreak originally used to
illustrate outbreaker, and used for the same purposes in
outbreaker2. This list contains the following:
Usage
fake_outbreak
Format
An object of class list of length 6.
Details
-
$onset: A vector of integers representing dates of onset.
-
$sample: A vector of integers representing the dates of isolation.
-
$dna: A DNAbin matrix of pathogen genome sequences.
-
$w: A numeric vector giving the empirical distribution of the
generation time.
-
$ances: A vector of integers indicating, for each case, the true
infectors. NA represents imported cases.
Author(s)
Thibaut Jombart thibautjombart@gmail.com
Examples
names(fake_outbreak)
fake_outbreak
reconhub/outbreaker2 documentation built on July 5, 2022, 12:25 p.m.
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| fake_outbreak | R Documentation |
Small simulated outbreak
Description
This dataset is a small (30 cases) simulated outbreak originally used to
illustrate outbreaker, and used for the same purposes in
outbreaker2. This list contains the following:
Usage
fake_outbreak
Format
An object of class list of length 6.
Details
-
$onset: A vector of integers representing dates of onset. -
$sample: A vector of integers representing the dates of isolation. -
$dna: A DNAbin matrix of pathogen genome sequences. -
$w: A numeric vector giving the empirical distribution of the generation time. -
$ances: A vector of integers indicating, for each case, the true infectors.NArepresents imported cases.
Author(s)
Thibaut Jombart thibautjombart@gmail.com
Examples
names(fake_outbreak) fake_outbreak
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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