sim_tsir_simple: Simple SIR simulation

In reichlab/TSIRsim: Simulating TSIR models

Description

Simple SIR simulation

Usage

sim_tsir_simple(pop, r.init, z.init, beta, under.obs, ntimes = 52)

Arguments

pop	integer, population
r.init	initial value for R state
z.init	initial value for Z (infected) state
beta	transmission parameter in model
under.obs	probability of an individual in Z being observed
ntimes	number of times to simulate

Value

A list with the following items

• "obs"observed time series of infected Z class

• "pop"The assumed fixed population size

• "r.init"The assumed initial value for the R class

• "z.init"The assumed initial value for the Z class

• "beta"The transmission parameter

• "under.obs"The assumed parameter for reporting probability

Examples

  sample.z = sim_tsir_simple(3.5e6, 0, 10, 1.5, 0.2)
  plot(sample.z$obs)
  sum(sample.z$obs)/sample.z$pop

reichlab/TSIRsim documentation built on May 27, 2019, 4:53 a.m.