API for reichlab/ssr-influenza-competition
Runs state-space reconstruction for CDC flu challenge
| Global functions | |
|---|---|
| assemble_prediction_examples | Source code |
| assemble_training_examples | Source code |
| compute_kernel_values | Source code |
| compute_lagged_obs_vecs | Source code |
| compute_normalized_log_weights | Source code |
| create_ssr_control | Source code |
| create_ssr_control_default | Source code |
| est_ssr_params_stepwise_crossval | Source code |
| est_ssr_params_stepwise_crossval_one_potential_step | Source code |
| get_default_kernel_fns | Source code |
| get_dist_predictions_one_week | Source code |
| get_inds_smallest_k | Source code |
| get_kernel_fn_init_params | Source code |
| get_prediction_season_week | Source code |
| get_pt_predictions_one_week | Source code |
| logspace_add | Source code |
| logspace_sub | Source code |
| logspace_sub_matrix_rows | Source code |
| logspace_sum_matrix_rows | Source code |
| mae | Source code |
| mae_from_kernel_weights_and_centers | Source code |
| make_competition_forecasts | Source code |
| make_competition_forecasts_by_trajectory | Source code |
| make_competition_forecasts_one_season_week | Source code |
| make_competition_forecasts_one_season_week_by_trajectory | Source code |
| mase | Source code |
| mase_from_kernel_weights_and_centers | Source code |
| periodic_kernel | Source code |
| simulate_counts_by_week | Source code |
| simulate_counts_by_week_by_trajectory | Source code |
| simulate_from_weighted_kde | Source code |
| simulate_from_weighted_kde_given_ind | Source code |
| squared_exp_kernel | Source code |
| ssr | Source code |
| ssr_crossval_estimate_parameter_loss | Source code |
| ssr_predict | Source code |
| ssr_predict_dengue_one_week | Source code |
| ssr_predict_given_lagged_obs | Source code |
| transform_theta_list | Source code |
| unvectorize_theta | Source code |
| unvectorize_theta_one_kernel_fn | Source code |
| validate_ssr_control | Source code |
| vectorize_theta | Source code |
