Files in reichlab/ssr-influenza-competition
Runs state-space reconstruction for CDC flu challenge

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DESCRIPTION
NAMESPACE
R/challenge-predictions.R R/ssr.R R/utility.R README.md
data/ili-national-1997-to-2015.rda
data/ili-region1-1997-to-2015.rda
data/ili-region10-1997-to-2015.rda
data/ili-region2-1997-to-2015.rda
data/ili-region3-1997-to-2015.rda
data/ili-region4-1997-to-2015.rda
data/ili-region5-1997-to-2015.rda
data/ili-region6-1997-to-2015.rda
data/ili-region7-1997-to-2015.rda
data/ili-region8-1997-to-2015.rda
data/ili-region9-1997-to-2015.rda
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph1-ili_national.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph1-ili_region1.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph1-ili_region10.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph1-ili_region2.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph1-ili_region3.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph1-ili_region4.Rdata
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inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph1-ili_region7.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph1-ili_region8.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph1-ili_region9.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph10-ili_national.Rdata
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inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph10-ili_region10.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph10-ili_region2.Rdata
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inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph10-ili_region9.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph11-ili_national.Rdata
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inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph11-ili_region9.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph12-ili_national.Rdata
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inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph13-ili_national.Rdata
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inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph13-ili_region9.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph14-ili_national.Rdata
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inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph15-ili_region3.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph15-ili_region4.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph15-ili_region5.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph15-ili_region6.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph15-ili_region7.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph15-ili_region8.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph15-ili_region9.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph16-ili_national.Rdata
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inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph16-ili_region10.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph16-ili_region2.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph16-ili_region3.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph16-ili_region4.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph16-ili_region5.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph16-ili_region6.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph16-ili_region7.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph16-ili_region8.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph16-ili_region9.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph17-ili_national.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph17-ili_region1.Rdata
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inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph17-ili_region2.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph17-ili_region3.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph17-ili_region4.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph17-ili_region5.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph17-ili_region6.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph17-ili_region7.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph17-ili_region8.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph17-ili_region9.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph18-ili_national.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph18-ili_region1.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph18-ili_region10.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph18-ili_region2.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph18-ili_region3.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph18-ili_region4.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph18-ili_region5.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph18-ili_region6.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph18-ili_region7.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph18-ili_region8.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph18-ili_region9.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph19-ili_national.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph19-ili_region1.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph19-ili_region10.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph19-ili_region2.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph19-ili_region3.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph19-ili_region4.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph19-ili_region5.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph19-ili_region6.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph19-ili_region7.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph19-ili_region8.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph19-ili_region9.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph2-ili_national.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph2-ili_region1.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph2-ili_region10.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph2-ili_region2.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph2-ili_region3.Rdata
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inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph2-ili_region5.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph2-ili_region6.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph2-ili_region7.Rdata
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inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph2-ili_region9.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph20-ili_national.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph20-ili_region1.Rdata
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inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph20-ili_region6.Rdata
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inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph20-ili_region8.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph20-ili_region9.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph21-ili_national.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph21-ili_region1.Rdata
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inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph21-ili_region2.Rdata
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inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph21-ili_region5.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph21-ili_region6.Rdata
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inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph22-ili_national.Rdata
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inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph23-ili_national.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph23-ili_region1.Rdata
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inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph23-ili_region4.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph23-ili_region5.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph23-ili_region6.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph23-ili_region7.Rdata
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inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph23-ili_region9.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph24-ili_national.Rdata
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inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph24-ili_region6.Rdata
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inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph24-ili_region9.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph25-ili_national.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph25-ili_region1.Rdata
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inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph25-ili_region9.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph26-ili_national.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph26-ili_region1.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph26-ili_region10.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph26-ili_region2.Rdata
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inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph26-ili_region4.Rdata
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inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph26-ili_region7.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph26-ili_region8.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph26-ili_region9.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph27-ili_national.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph27-ili_region1.Rdata
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inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph27-ili_region2.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph27-ili_region3.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph27-ili_region4.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph27-ili_region5.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph27-ili_region6.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph27-ili_region7.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph27-ili_region8.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph27-ili_region9.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph28-ili_national.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph28-ili_region1.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph28-ili_region10.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph28-ili_region2.Rdata
inst/estimation/2015-cdc-flu-competition/fit-competition-ssr-ph28-ili_region3.Rdata
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inst/wrapup-meetings/2015-2016/official-results/Milestones_2015_16.xlsx
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inst/wrapup-meetings/2015-2016/presentation/KoT-presentation.pdf
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inst/wrapup-meetings/2015-2016/presentation/Plots/kcde-plots.R inst/wrapup-meetings/2015-2016/presentation/Plots/kot_score_plots_US_only.pdf
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inst/wrapup-meetings/2015-2016/presentation/Plots/weighted-kde.R inst/wrapup-meetings/2015-2016/presentation/Plots/weighted-kde.pdf inst/wrapup-meetings/2015-2016/presentation/Plots/x-space-kernel.R inst/wrapup-meetings/2015-2016/presentation/Plots/x-space-kernel.pdf
src/Makevars
src/Makevars.win
src/utility.c
src/utility.h
tests/testthat/test-ssr-predict.R
reichlab/ssr-influenza-competition documentation built on May 24, 2017, 10:47 p.m.