Files in reimandlab/RM2
Regression Models For Localised Mutations
.Rbuildignore
.Rhistory
.gitignore
DESCRIPTION
NAMESPACE
R/ctcf_chr3_4-data.R
R/merging_final_pretest_dataframe.R
R/mutations_chr3_4-data.R
R/plotting_mutation_patterns.R
R/preparing_mutations.R
R/preparing_site_bins.R
R/running_glm.R
R/sequence_trinucleotides.R
README.md
RM2.Rproj
data/ctcf_chr3_4.txt
data/mutations_chr3_4.txt
images/RM2_example_plot.png
man/RM2.Rd
man/RM2_downsample.Rd
man/dot-count_trinuc_muts.Rd
man/dot-get_all_trinucs.Rd
man/dot-get_quadnuc_map.Rd
man/dot-get_trinucs2.Rd
man/dot-maf_to_dfr2.Rd
man/dot-merge_sites_and_muts.Rd
man/dot-predict_muts_ranges_probs.Rd
man/dot-prepare_bins_of_sites.Rd
man/dot-prepare_sites2.Rd
man/dot-shall_it_pass.Rd
man/dot-split_seq_trinucs.Rd
man/dot-test_NB_model.Rd
man/dot-trim_chrom_boundaries.Rd
man/dot-which_median.Rd
man/get_mut_trinuc_strand.Rd
man/get_mutations_in_flanked_sites.Rd
man/plot_mutations_in_flanked_sites.Rd
