dot-merge_sites_and_muts: Combines quadnucleotide counts and site information

In reimandlab/RM2: Regression Models For Localised Mutations

Combines quadnucleotide counts and site information

Description

Combines quadnucleotide counts and site information

Usage

.merge_sites_and_muts(gr_seq, gr_maf, trinuc, is_site)

Arguments

gr_seq	GenomicRanges object of site/flanks chromosomes and positions
gr_maf	GenomicRanges object with mcols containing quadnucleotide context or indel
trinuc	Data frame of counts for each trinucleotide counts extended to each quadnucleotide
is_site	Boolean indicating whether mutation is within site or flanking region

Value

Data frame containing mutation and trinucleotide counts for each quadnucleotide context + indel. Includes boolean indicator of is_site

reimandlab/RM2 documentation built on Aug. 13, 2022, 12:22 p.m.